Skip to content

onconova.interoperability.fhir.models.Lifestyle

NoneType module-attribute

OnconovaLifestyle

Bases: USCoreSimpleObservationProfile

assessment observation

bodySite class-attribute instance-attribute

code class-attribute instance-attribute

component class-attribute instance-attribute

device class-attribute instance-attribute

effective property

encounter class-attribute instance-attribute

focus class-attribute instance-attribute

hasMember class-attribute instance-attribute

interpretation class-attribute instance-attribute

issued class-attribute instance-attribute

performer class-attribute instance-attribute

referenceRange class-attribute instance-attribute

specimen class-attribute instance-attribute

status class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
553
554
555
556
557
558
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='LA32823-9', display='Lifestyle', system='http://loinc.org')]),
    )

FHIR_o_lif_req_1_constraint_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
587
588
589
590
591
592
593
594
595
@model_validator(mode="after")
def FHIR_o_lif_req_1_constraint_validator(self):
    return validate_model_constraint( 
        self,
        expression='subject.exists()',
        human='The subject element is required and must be provided.',
        key='o-lif-req-1',
        severity='error',
    )

FHIR_o_lif_req_2_constraint_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
597
598
599
600
601
602
603
604
605
@model_validator(mode="after")
def FHIR_o_lif_req_2_constraint_validator(self):
    return validate_model_constraint( 
        self,
        expression='effectiveDateTime.exists() and effectiveDateTime.hasValue()',
        human='The effectiveDateTime element is required and must be provided.',
        key='o-lif-req-2',
        severity='error',
    )

FHIR_obs_3_constraint_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
576
577
578
579
580
581
582
583
584
585
@model_validator(mode="after")
def FHIR_obs_3_constraint_validator(self):
    return validate_element_constraint( 
        self,
        elements="referenceRange",
        expression='low.exists() or high.exists() or text.exists()',
        human='Must have at least a low or a high or text',
        key='obs-3',
        severity='error',
    )

component_slicing_cardinality_validator(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
560
561
562
563
564
565
@field_validator(*('component',), mode="after", check_fields=None)
@classmethod
def component_slicing_cardinality_validator(cls, value):    
    return validate_slicing_cardinalities(cls, value, 
        field_name="component",
    )

effective_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
567
568
569
570
571
572
573
574
@model_validator(mode="after")
def effective_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['DateTime'],
        field_name_base="effective",
        required=False,
    )

OnconovaLifestyleAlcoholConsumption

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueCodeableConcept class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
350
351
352
353
354
355
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='1106630-7', display='Alcohol use pattern', system='http://loinc.org')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
357
358
359
360
361
362
363
364
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['CodeableConcept'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleExposures

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueCodeableConcept class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
470
471
472
473
474
475
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='C16552', display='Environmental Exposure', system='http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
477
478
479
480
481
482
483
484
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['CodeableConcept'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleNightSleep

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueQuantity class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
390
391
392
393
394
395
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='93832-4', display='Sleep duration', system='http://loinc.org')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
397
398
399
400
401
402
403
404
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['Quantity'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleRecreationalDrug

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueCodeableConcept class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
430
431
432
433
434
435
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='C84368', display='Recreational Drug', system='http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
437
438
439
440
441
442
443
444
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['CodeableConcept'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleSmokingPackyears

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueQuantity class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
270
271
272
273
274
275
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='8664-5', display='Cigarettes smoked total (pack per year) - Reported', system='http://loinc.org')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
277
278
279
280
281
282
283
284
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['Quantity'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleSmokingQuited

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueQuantity class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
310
311
312
313
314
315
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='107339-4', display='Temporary smoking cessation [Time]', system='http://loinc.org')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
317
318
319
320
321
322
323
324
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['Quantity'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleSmokingStatus

Bases: ObservationComponent, FHIRSliceModel

Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.

code class-attribute instance-attribute

max_cardinality class-attribute

min_cardinality class-attribute

value property

valueCodeableConcept class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
200
201
202
203
204
205
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern=CodeableConcept(coding=[Coding(code='72166-2', display='Tobacco smoking status', system='http://loinc.org')]),
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
207
208
209
210
211
212
213
214
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['CodeableConcept'],
        field_name_base="value",
        required=False,
    )

OnconovaLifestyleValueQuantity

Bases: Quantity

The information determined as a result of making the observation, if the information has a simple value.

code class-attribute instance-attribute

system class-attribute instance-attribute

FHIR_code_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
239
240
241
242
243
244
@field_validator(*('code',), mode="after", check_fields=None)
@classmethod
def FHIR_code_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern='{pack-year}',
    )

FHIR_system_pattern_constraint(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
232
233
234
235
236
237
@field_validator(*('system',), mode="after", check_fields=None)
@classmethod
def FHIR_system_pattern_constraint(cls, value):    
    return validate_FHIR_element_pattern(cls, value, 
        pattern='http://unitsofmeasure.org',
    )

USCoreSimpleObservationProfile

Bases: Observation

assessment observation

category class-attribute instance-attribute

code class-attribute instance-attribute

derivedFrom class-attribute instance-attribute

effective property

effectiveDateTime class-attribute instance-attribute

effectiveInstant class-attribute instance-attribute

effectivePeriod class-attribute instance-attribute

effectiveTiming class-attribute instance-attribute

performer class-attribute instance-attribute

status class-attribute instance-attribute

subject class-attribute instance-attribute

value property

valueBoolean class-attribute instance-attribute

valueCodeableConcept class-attribute instance-attribute

valueDateTime class-attribute instance-attribute

valueInteger class-attribute instance-attribute

valuePeriod class-attribute instance-attribute

valueQuantity class-attribute instance-attribute

valueRange class-attribute instance-attribute

valueRatio class-attribute instance-attribute

valueSampledData class-attribute instance-attribute

valueString class-attribute instance-attribute

valueTime class-attribute instance-attribute

FHIR_obs_6_constraint_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
156
157
158
159
160
161
162
163
164
@model_validator(mode="after")
def FHIR_obs_6_constraint_validator(self):
    return validate_model_constraint( 
        self,
        expression='dataAbsentReason.empty() or value.empty()',
        human='dataAbsentReason SHALL only be present if Observation.value[x] is not present',
        key='obs-6',
        severity='error',
    )

FHIR_obs_7_constraint_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
166
167
168
169
170
171
172
173
174
@model_validator(mode="after")
def FHIR_obs_7_constraint_validator(self):
    return validate_model_constraint( 
        self,
        expression='value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()',
        human='If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present',
        key='obs-7',
        severity='error',
    )

category_slicing_cardinality_validator(value) classmethod

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
131
132
133
134
135
136
@field_validator(*('category',), mode="after", check_fields=None)
@classmethod
def category_slicing_cardinality_validator(cls, value):    
    return validate_slicing_cardinalities(cls, value, 
        field_name="category",
    )

effective_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
138
139
140
141
142
143
144
145
@model_validator(mode="after")
def effective_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['DateTime', 'Period', 'Timing', 'Instant'],
        field_name_base="effective",
        required=False,
    )

value_type_choice_validator()

Source code in onconova/interoperability/fhir/models/Lifestyle.py 
147
148
149
150
151
152
153
154
@model_validator(mode="after")
def value_type_choice_validator(self):
    return validate_type_choice_element( 
        self,
        field_types=['Quantity', 'CodeableConcept', 'String', 'Boolean', 'Integer', 'Range', 'Ratio', 'SampledData', 'Time', 'DateTime', 'Period'],
        field_name_base="value",
        required=False,
    )

USCoreSimpleObservationProfileUsCore

Bases: CodeableConcept, FHIRSliceModel

A code that classifies the general type of observation being made.

max_cardinality class-attribute

min_cardinality class-attribute

runner