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onconova.interoperability.fhir.controllers.patient

PatientController

Bases: FhirBaseController

create_patient(payload)

Source code in onconova/interoperability/fhir/controllers/patient.py 
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@route.post(
    path="",
    response={
        200: CancerPatientProfile | OperationOutcome | None,
        400: OperationOutcome,
        409: OperationOutcome,
    },
    permissions=[perms.CanManageCases],
    operation_id="createPatient",
    exclude_none=True,
    summary="Create a new resource",
)
def create_patient(self, payload: OnconovaCancerPatient):
    return self.create_fhir_resource(CancerPatientProfile.model_validate(payload))

delete_patient(rid)

Source code in onconova/interoperability/fhir/controllers/patient.py 
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@route.delete(
    path="{rid}",
    response={
        204: None,
        404: OperationOutcome,
    },
    permissions=[perms.CanManageCases],
    operation_id="deletePatient",
    exclude_none=True,
    summary="Delete the resource so that it no exists (no read, search etc)",
)
def delete_patient(self, rid: str):
    return self.delete_fhir_resource(rid, PatientCase)

fetch_mcode_patient_bundle(rid)

Source code in onconova/interoperability/fhir/controllers/patient.py 
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@route.get(
    path="{rid}/$mcode-everything",
    response={200: BundleProfile, **COMMON_READ_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="FetchmCODEPatientBundle",
    exclude_none=True,
    summary="Read the current state of the resource",
)
def fetch_mcode_patient_bundle(self, rid: str):
    if not (instance := PatientCase.objects.filter(id=rid).first()):
        # If resource not found, check if it was deleted
        if PatientCase.pgh_event_model.objects.filter(pgh_obj_id=rid, pgh_label="delete").exists():  # type: ignore
            return 410, None
        else:
            return 404, None
    # Set the Last-Modified header if the instance has an updated_at timestamp
    if getattr(instance, "updated_at", None):
        assert self.context and self.context.response
        self.context.response.headers["Last-Modified"] = instance.updated_at.isoformat()  # type: ignore
    return BundleProfile.construct_bundle(instance)

read_patient(rid)

Source code in onconova/interoperability/fhir/controllers/patient.py 
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@route.get(
    path="{rid}",
    response={200: CancerPatientProfile, **COMMON_READ_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="readPatient",
    exclude_none=True,
    summary="Read the current state of the resource",
)
def read_patient(self, rid: str):
    return self.read_fhir_resource(rid, PatientCase)

update_patient(rid, payload)

Source code in onconova/interoperability/fhir/controllers/patient.py 
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@route.put(
    path="{rid}",
    response={
        200: CancerPatientProfile | OperationOutcome | None,
        **COMMON_UPDATE_HTTP_ERRORS,
    },
    permissions=[perms.CanManageCases],
    operation_id="updatePatient",
    exclude_none=True,
    summary="Update the current state of the resource",
)
def update_patient(self, rid: str, payload: OnconovaCancerPatient):
    return self.update_fhir_resource(
        rid, CancerPatientProfile.model_validate(payload)
    )
runner