Onconova Implementation Guide - Local Development build (v0.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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: Coding DNA Change Types Value Set - JSON Representation

Active as of 2026-03-18

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{
  "resourceType" : "ValueSet",
  "id" : "onconova-vs-dna-change-types",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet onconova-vs-dna-change-types</b></p><a name=\"onconova-vs-dna-change-types\"> </a><a name=\"hconconova-vs-dna-change-types\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href=\"http://sequenceontology.org\"><code>http://sequenceontology.org</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>SO:1000002</td><td>substitution</td></tr><tr><td>SO:1000032</td><td>delins</td></tr><tr><td>SO:0000667</td><td>insertion</td></tr><tr><td>SO:0000159</td><td>deletion</td></tr><tr><td>SO:1000035</td><td>duplication</td></tr><tr><td>SO:1000036</td><td>inversion</td></tr><tr><td>SO:0002073</td><td>no_sequence_alteration</td></tr><tr><td>SO:0002096</td><td>short_tandem_repeat_variation</td></tr><tr><td>SO:0000199</td><td>translocation</td></tr><tr><td>SO:0000453</td><td>transposition</td></tr></table></li><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/6.2.0/CodeSystem-v3-nciThesaurus.html\"><code>http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C17961</td><td>DNA Methylation</td></tr></table></li></ul></div>"
  },
  "url" : "http://onconova.github.io/fhir/ValueSet/onconova-vs-dna-change-types",
  "version" : "0.2.0",
  "name" : "DNAChangeTypes",
  "title" : "Coding DNA Change Types Value Set",
  "status" : "active",
  "date" : "2026-03-18T14:24:59+00:00",
  "publisher" : "Onconova",
  "contact" : [
    {
      "name" : "Onconova",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://onconova.github.io/docs"
        }
      ]
    }
  ],
  "description" : "Coding DNA change types due to a genomic variant. It constraints and expands the original [LOINC Answer List LL380-7](https://loinc.org/LL380-7/) to enforce Onconova-compatible codes",
  "compose" : {
    "include" : [
      {
        "system" : "http://sequenceontology.org",
        "concept" : [
          {
            "code" : "SO:1000002",
            "display" : "substitution"
          },
          {
            "code" : "SO:1000032",
            "display" : "delins"
          },
          {
            "code" : "SO:0000667",
            "display" : "insertion"
          },
          {
            "code" : "SO:0000159",
            "display" : "deletion"
          },
          {
            "code" : "SO:1000035",
            "display" : "duplication"
          },
          {
            "code" : "SO:1000036",
            "display" : "inversion"
          },
          {
            "code" : "SO:0002073",
            "display" : "no_sequence_alteration"
          },
          {
            "code" : "SO:0002096",
            "display" : "short_tandem_repeat_variation"
          },
          {
            "code" : "SO:0000199",
            "display" : "translocation"
          },
          {
            "code" : "SO:0000453",
            "display" : "transposition"
          }
        ]
      },
      {
        "system" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl",
        "concept" : [
          {
            "code" : "C17961",
            "display" : "DNA Methylation"
          }
        ]
      }
    ]
  }
}