Onconova Implementation Guide - Local Development build (v0.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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: Amino Acid Change Type Value Set - JSON Representation

Active as of 2026-03-18

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{
  "resourceType" : "ValueSet",
  "id" : "onconova-vs-amino-acid-change-types",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet onconova-vs-amino-acid-change-types</b></p><a name=\"onconova-vs-amino-acid-change-types\"> </a><a name=\"hconconova-vs-amino-acid-change-types\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href=\"http://loinc.org\"><code>http://loinc.org</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"https://loinc.org/LA6698-0/\">LA6698-0</a></td><td>Missense</td></tr><tr><td><a href=\"https://loinc.org/LA6699-8/\">LA6699-8</a></td><td>Nonsense</td></tr><tr><td><a href=\"https://loinc.org/LA9659-9/\">LA9659-9</a></td><td>Insertion and Deletion</td></tr><tr><td><a href=\"https://loinc.org/LA6687-3/\">LA6687-3</a></td><td>Insertion</td></tr><tr><td><a href=\"https://loinc.org/LA6692-3/\">LA6692-3</a></td><td>Deletion</td></tr><tr><td><a href=\"https://loinc.org/LA6686-5/\">LA6686-5</a></td><td>Duplication</td></tr><tr><td><a href=\"https://loinc.org/LA6694-9/\">LA6694-9</a></td><td>Frameshift</td></tr><tr><td><a href=\"https://loinc.org/LA6701-2/\">LA6701-2</a></td><td>Stop Codon Mutation</td></tr><tr><td><a href=\"https://loinc.org/LA6700-4/\">LA6700-4</a></td><td>Silent</td></tr></table></li><li>Include these codes as defined in <a href=\"http://sequenceontology.org\"><code>http://sequenceontology.org</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>SO:0002395</td><td>lost_polypeptide</td></tr><tr><td>SO:0001068</td><td>polypeptide_repeat</td></tr></table></li></ul></div>"
  },
  "url" : "http://onconova.github.io/fhir/ValueSet/onconova-vs-amino-acid-change-types",
  "version" : "0.2.0",
  "name" : "AminoAcidChangeTypes",
  "title" : "Amino Acid Change Type Value Set",
  "status" : "active",
  "date" : "2026-03-18T14:24:59+00:00",
  "publisher" : "Onconova",
  "contact" : [
    {
      "name" : "Onconova",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://onconova.github.io/docs"
        }
      ]
    }
  ],
  "description" : "Amino acid change types due to a genomic variant. It constraints and expands the original [LOINC Answer List LL380-7](https://loinc.org/LL380-7/) to enforce Onconova-compatible codes",
  "compose" : {
    "include" : [
      {
        "system" : "http://loinc.org",
        "concept" : [
          {
            "code" : "LA6698-0",
            "display" : "Missense"
          },
          {
            "code" : "LA6699-8",
            "display" : "Nonsense"
          },
          {
            "code" : "LA9659-9",
            "display" : "Insertion and Deletion"
          },
          {
            "code" : "LA6687-3",
            "display" : "Insertion"
          },
          {
            "code" : "LA6692-3",
            "display" : "Deletion"
          },
          {
            "code" : "LA6686-5",
            "display" : "Duplication"
          },
          {
            "code" : "LA6694-9",
            "display" : "Frameshift"
          },
          {
            "code" : "LA6701-2",
            "display" : "Stop Codon Mutation"
          },
          {
            "code" : "LA6700-4",
            "display" : "Silent"
          }
        ]
      },
      {
        "system" : "http://sequenceontology.org",
        "concept" : [
          {
            "code" : "SO:0002395",
            "display" : "lost_polypeptide"
          },
          {
            "code" : "SO:0001068",
            "display" : "polypeptide_repeat"
          }
        ]
      }
    ]
  }
}