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onconova.oncology.controllers.systemic_therapy

SystemicTherapyController

Bases: ControllerBase

create_systemic_therapy(payload)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.post(
    path="",
    response={201: ModifiedResourceSchema, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="createSystemicTherapy",
)
def create_systemic_therapy(self, payload: scm.SystemicTherapyCreate):
    return 201, payload.model_dump_django().assign_therapy_line()

create_systemic_therapy_medication(systemicTherapyId, payload)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.post(
    path="/{systemicTherapyId}/medications",
    response={201: ModifiedResourceSchema, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="createSystemicTherapyMedication",
)
def create_systemic_therapy_medication(self, systemicTherapyId: str, payload: scm.SystemicTherapyMedicationCreate):  
    instance = orm.SystemicTherapyMedication(
        systemic_therapy=get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)
    )
    return 201, payload.model_dump_django(instance=instance, create=True)

delete_systemic_therapy(systemicTherapyId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.delete(
    path="/{systemicTherapyId}",
    response={204: None, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="deleteSystemicTherapyById",
)
def delete_systemic_therapy(self, systemicTherapyId: str):
    instance = get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)
    case = instance.case
    instance.delete()
    orm.TherapyLine.assign_therapy_lines(case)
    return 204, None

delete_systemic_therapy_medication(systemicTherapyId, medicationId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.delete(
    path="/{systemicTherapyId}/medications/{medicationId}",
    response={204: None, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="deleteSystemicTherapyMedication",
)
def delete_systemic_therapy_medication(
    self, systemicTherapyId: str, medicationId: str
):
    instance = get_object_or_404(
        orm.SystemicTherapyMedication,
        id=medicationId,
        systemic_therapy__id=systemicTherapyId,
    )
    case = instance.systemic_therapy.case
    instance.delete()
    orm.TherapyLine.assign_therapy_lines(case)
    return 204, None

get_all_systemic_therapies_matching_the_query(query)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="",
    response={
        200: Paginated[scm.SystemicTherapy],
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getSystemicTherapies",
)
@paginate()
@ordering()
@anonymize()
def get_all_systemic_therapies_matching_the_query(self, query: Query[scm.SystemicTherapyFilters]):  # type: ignore
    queryset = orm.SystemicTherapy.objects.all().order_by("-period")
    return query.filter(queryset)

get_all_systemic_therapy_history_events(systemicTherapyId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}/history/events",
    response={
        200: Paginated[HistoryEvent.bind_schema(scm.SystemicTherapyCreate)],
        404: None,
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getAllSystemicTherapyHistoryEvents",
)
@paginate()
@ordering()
def get_all_systemic_therapy_history_events(self, systemicTherapyId: str):
    instance = get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)
    return pghistory.models.Events.objects.tracks(instance).all()  # type: ignore

get_all_systemic_therapy_medication_history_events(systemicTherapyId, medicationId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}/medications/{medicationId}/history/events",
    response={
        200: Paginated[
            HistoryEvent.bind_schema(scm.SystemicTherapyMedicationCreate)
        ],
        404: None,
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getAllSystemicTherapyMedicationHistoryEvents",
)
@paginate()
@ordering()
def get_all_systemic_therapy_medication_history_events(
    self, systemicTherapyId: str, medicationId: str
):
    instance = get_object_or_404(
        orm.SystemicTherapyMedication,
        id=medicationId,
        systemic_therapy__id=systemicTherapyId,
    )
    return pghistory.models.Events.objects.tracks(instance).all()  # type: ignore

get_systemic_therapy_by_id(systemicTherapyId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}",
    response={200: scm.SystemicTherapy, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanViewCases],
    operation_id="getSystemicTherapyById",
)
@anonymize()
def get_systemic_therapy_by_id(self, systemicTherapyId: str):
    return get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)

get_systemic_therapy_history_event_by_id(systemicTherapyId, eventId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}/history/events/{eventId}",
    response={
        200: HistoryEvent.bind_schema(scm.SystemicTherapyCreate),
        404: None,
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getSystemicTherapyHistoryEventById",
)
def get_systemic_therapy_history_event_by_id(
    self, systemicTherapyId: str, eventId: str
):
    instance = get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)
    return get_object_or_404(
        pghistory.models.Events.objects.tracks(instance), pgh_id=eventId  # type: ignore
    )

get_systemic_therapy_medication_by_id(systemicTherapyId, medicationId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}/medications/{medicationId}",
    response={
        200: scm.SystemicTherapyMedication,
        404: None,
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getSystemicTherapyMedicationById",
)
def get_systemic_therapy_medication_by_id(self, systemicTherapyId: str, medicationId: str):  # type: ignore
    return get_object_or_404(
        orm.SystemicTherapyMedication,
        id=medicationId,
        systemic_therapy__id=systemicTherapyId,
    )

get_systemic_therapy_medication_history_event_by_id(systemicTherapyId, medicationId, eventId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}/medications/{medicationId}/history/events/{eventId}",
    response={
        200: HistoryEvent.bind_schema(scm.SystemicTherapyMedicationCreate),
        404: None,
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getSystemicTherapyMedicationHistoryEventById",
)
def get_systemic_therapy_medication_history_event_by_id(
    self, systemicTherapyId: str, medicationId: str, eventId: str
):
    instance = get_object_or_404(
        orm.SystemicTherapyMedication,
        id=medicationId,
        systemic_therapy__id=systemicTherapyId,
    )
    return get_object_or_404(
        pghistory.models.Events.objects.tracks(instance), pgh_id=eventId  # type: ignore
    )

get_systemic_therapy_medications_matching_the_query(systemicTherapyId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.get(
    path="/{systemicTherapyId}/medications",
    response={
        200: List[scm.SystemicTherapyMedication],
        404: None,
        **COMMON_HTTP_ERRORS,
    },
    permissions=[perms.CanViewCases],
    operation_id="getSystemicTherapyMedications",
)
def get_systemic_therapy_medications_matching_the_query(self, systemicTherapyId: str):  # type: ignore
    return get_object_or_404(
        orm.SystemicTherapy, id=systemicTherapyId
    ).medications.all()  # type: ignore

revert_systemic_therapy_medication_to_history_event(systemicTherapyId, medicationId, eventId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.put(
    path="/{systemicTherapyId}/medications/{medicationId}/history/events/{eventId}/reversion",
    response={201: ModifiedResourceSchema, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="revertSystemicTherapyMedicationToHistoryEvent",
)
def revert_systemic_therapy_medication_to_history_event(
    self, systemicTherapyId: str, medicationId: str, eventId: str
):
    instance = get_object_or_404(
        orm.SystemicTherapyMedication,
        id=medicationId,
        systemic_therapy__id=systemicTherapyId,
    )
    return 201, get_object_or_404(instance.events, pgh_id=eventId).revert()

revert_systemic_therapy_to_history_event(systemicTherapyId, eventId)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.put(
    path="/{systemicTherapyId}/history/events/{eventId}/reversion",
    response={201: ModifiedResourceSchema, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="revertSystemicTherapyToHistoryEvent",
)
def revert_systemic_therapy_to_history_event(
    self, systemicTherapyId: str, eventId: str
):
    instance = get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)
    return 201, get_object_or_404(instance.events, pgh_id=eventId).revert()

update_systemic_therapy(systemicTherapyId, payload)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.put(
    path="/{systemicTherapyId}",
    response={200: ModifiedResourceSchema, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="updateSystemicTherapy",
)
def update_systemic_therapy(self, systemicTherapyId: str, payload: scm.SystemicTherapyCreate):
    instance = get_object_or_404(orm.SystemicTherapy, id=systemicTherapyId)
    return payload.model_dump_django(instance=instance).assign_therapy_line()

update_systemic_therapy_medication(systemicTherapyId, medicationId, payload)

Source code in onconova/oncology/controllers/systemic_therapy.py 
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@route.put(
    path="/{systemicTherapyId}/medications/{medicationId}",
    response={200: ModifiedResourceSchema, 404: None, **COMMON_HTTP_ERRORS},
    permissions=[perms.CanManageCases],
    operation_id="updateSystemicTherapyMedication",
)
def update_systemic_therapy_medication(self, systemicTherapyId: str, medicationId: str, payload: scm.SystemicTherapyMedicationCreate):  
    instance = get_object_or_404(
        orm.SystemicTherapyMedication,
        id=medicationId,
        systemic_therapy__id=systemicTherapyId,
    )
    return payload.model_dump_django(instance=instance)
runner