Database Schema Documentation¶
This is an autogenerated documentation of the ONCONOVA database tables.
Pghistory Tables¶
Context¶
Table Name: pghistory_context
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Id | PRIMARY KEY, UNIQUE, REQUIRED | |
created_at |
datetime |
Created at | ||
updated_at |
datetime |
Updated at | ||
metadata |
json |
Metadata | REQUIRED |
Events¶
Table Name: pghistory_events
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_slug |
text |
The unique identifier across all event tables. | PRIMARY KEY, UNIQUE, REQUIRED | |
pgh_model |
char |
The event model. | REQUIRED | |
pgh_id |
biginteger |
The primary key of the event. | REQUIRED | |
pgh_created_at |
datetime |
When the event was created. | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_data |
json |
The raw data of the event. | REQUIRED | |
pgh_diff |
json |
The diff between the previous event of the same label. | REQUIRED | |
pgh_context_id |
uuid |
The context UUID. | NULLABLE, REQUIRED | |
pgh_context |
json |
The context associated with the event. | NULLABLE, REQUIRED | |
pgh_obj_model |
char |
The object model. | REQUIRED | |
pgh_obj_id |
text |
The primary key of the object. | NULLABLE, REQUIRED |
Middleware Events¶
Table Name: pghistory_events
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_slug |
text |
The unique identifier across all event tables. | PRIMARY KEY, UNIQUE, REQUIRED | |
pgh_model |
char |
The event model. | REQUIRED | |
pgh_id |
biginteger |
The primary key of the event. | REQUIRED | |
pgh_created_at |
datetime |
When the event was created. | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_data |
json |
The raw data of the event. | REQUIRED | |
pgh_diff |
json |
The diff between the previous event of the same label. | REQUIRED | |
pgh_context_id |
uuid |
The context UUID. | NULLABLE, REQUIRED | |
pgh_context |
json |
The context associated with the event. | NULLABLE, REQUIRED | |
pgh_obj_model |
char |
The object model. | REQUIRED | |
pgh_obj_id |
text |
The primary key of the object. | NULLABLE, REQUIRED | |
user |
ForeignKey |
The user associated with the event. | ForeignKey to User |
NULLABLE, REQUIRED |
url |
text |
The url associated with the event. | NULLABLE, REQUIRED |
Core Tables¶
User¶
Table Name: core_user
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
password |
char |
Password | REQUIRED | |
last_login |
datetime |
Last login | NULLABLE | |
is_superuser |
boolean |
Designates that this user has all permissions without explicitly assigning them. | REQUIRED | |
username |
char |
Required. 150 characters or fewer. Letters, digits and @/./+/-/_ only. | UNIQUE, REQUIRED | |
first_name |
char |
First name | ||
last_name |
char |
Last name | ||
email |
char |
Email address | ||
is_staff |
boolean |
Designates whether the user can log into this admin site. | REQUIRED | |
is_active |
boolean |
Designates whether this user should be treated as active. Unselect this instead of deleting accounts. | REQUIRED | |
date_joined |
datetime |
Date joined | REQUIRED | |
id |
uuid |
Id | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
Name of the source from which the user originated, if imported | NULLABLE | |
external_source_id |
char |
Unique identifier within the source from which the user originated, if imported | NULLABLE | |
is_service_account |
boolean |
Whether the user is a technical service account | REQUIRED | |
title |
char |
Personal title of the user | NULLABLE | |
organization |
char |
Organization to which the user belongs to | NULLABLE | |
department |
char |
Department within an organization to which the user belongs to | NULLABLE | |
access_level |
integer |
Level of access of the user in terms of permissions | REQUIRED | |
shareable |
boolean |
Whether user has consented to its data to be shared with other Onconova instances | NULLABLE, REQUIRED | |
groups |
manytomany |
The groups this user belongs to. A user will get all permissions granted to each of their groups. | ManyToMany with Group |
|
user_permissions |
manytomany |
Specific permissions for this user. | ManyToMany with Permission |
Terminology Tables¶
Family Member Type¶
Table Name: terminology_familymembertype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to FamilyMemberType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Alcohol Consumption Frequency¶
Table Name: terminology_alcoholconsumptionfrequency
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AlcoholConsumptionFrequency |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Administrative Gender¶
Table Name: terminology_administrativegender
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdministrativeGender |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Procedure Outcome¶
Table Name: terminology_procedureoutcome
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ProcedureOutcome |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Laterality Qualifier¶
Table Name: terminology_lateralityqualifier
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to LateralityQualifier |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Topography¶
Table Name: terminology_cancertopography
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerTopography |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Topography Group¶
Table Name: terminology_cancertopography
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerTopography |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Morphology¶
Table Name: terminology_cancermorphology
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerMorphology |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Morphology Primary¶
Table Name: terminology_cancermorphology
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerMorphology |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Morphology Metastatic¶
Table Name: terminology_cancermorphology
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerMorphology |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Histology Differentiation¶
Table Name: terminology_histologydifferentiation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to HistologyDifferentiation |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Body Location Qualifier¶
Table Name: terminology_bodylocationqualifier
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to BodyLocationQualifier |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Gender Identity¶
Table Name: terminology_genderidentity
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to GenderIdentity |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Ecog Performance Status Interpretation¶
Table Name: terminology_ecogperformancestatusinterpretation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ECOGPerformanceStatusInterpretation |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Karnofsky Performance Status Interpretation¶
Table Name: terminology_karnofskyperformancestatusinterpretation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to KarnofskyPerformanceStatusInterpretation |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Treatment Termination Reason¶
Table Name: terminology_treatmentterminationreason
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TreatmentTerminationReason |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Antineoplastic Agent¶
Table Name: terminology_antineoplasticagent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AntineoplasticAgent |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE | |
therapy_category |
char |
Therapy classification | NULLABLE |
Dosage Route¶
Table Name: terminology_dosageroute
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to DosageRoute |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Surgical Procedure¶
Table Name: terminology_surgicalprocedure
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to SurgicalProcedure |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Radiotherapy Modality¶
Table Name: terminology_radiotherapymodality
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RadiotherapyModality |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Radiotherapy Technique¶
Table Name: terminology_radiotherapytechnique
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RadiotherapyTechnique |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Radiotherapy Volume Type¶
Table Name: terminology_radiotherapyvolumetype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RadiotherapyVolumeType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Observation Body Site¶
Table Name: terminology_observationbodysite
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ObservationBodySite |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Radiotherapy Treatment Location¶
Table Name: terminology_radiotherapytreatmentlocation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RadiotherapyTreatmentLocation |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Radiotherapy Treatment Location Qualifier¶
Table Name: terminology_radiotherapytreatmentlocationqualifier
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RadiotherapyTreatmentLocationQualifier |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Stage¶
Table Name: terminology_tnmstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Staging Method¶
Table Name: terminology_tnmstagingmethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMStagingMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Primary Tumor Category¶
Table Name: terminology_tnmprimarytumorcategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMPrimaryTumorCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Primary Tumor Staging Type¶
Table Name: terminology_tnmprimarytumorstagingtype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMPrimaryTumorStagingType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Distant Metastases Category¶
Table Name: terminology_tnmdistantmetastasescategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMDistantMetastasesCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Distant Metastases Staging Type¶
Table Name: terminology_tnmdistantmetastasesstagingtype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMDistantMetastasesStagingType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Regional Nodes Category¶
Table Name: terminology_tnmregionalnodescategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMRegionalNodesCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Regional Nodes Staging Type¶
Table Name: terminology_tnmregionalnodesstagingtype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMRegionalNodesStagingType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Grade Category¶
Table Name: terminology_tnmgradecategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMGradeCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Residual Tumor Category¶
Table Name: terminology_tnmresidualtumorcategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMResidualTumorCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Lymphatic Invasion Category¶
Table Name: terminology_tnmlymphaticinvasioncategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMLymphaticInvasionCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Venous Invasion Category¶
Table Name: terminology_tnmvenousinvasioncategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMVenousInvasionCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Perineural Invasion Category¶
Table Name: terminology_tnmperineuralinvasioncategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMPerineuralInvasionCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tnm Serum Tumor Marker Level Category¶
Table Name: terminology_tnmserumtumormarkerlevelcategory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TNMSerumTumorMarkerLevelCategory |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Figo Stage¶
Table Name: terminology_figostage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to FIGOStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Figo Staging Method¶
Table Name: terminology_figostagingmethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to FIGOStagingMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Binet Stage¶
Table Name: terminology_binetstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to BinetStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Rai Stage¶
Table Name: terminology_raistage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RaiStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Rai Staging Method¶
Table Name: terminology_raistagingmethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RaiStagingMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Lymphoma Stage¶
Table Name: terminology_lymphomastage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to LymphomaStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Lymphoma Staging Method¶
Table Name: terminology_lymphomastagingmethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to LymphomaStagingMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Lymphoma Stage Value Modifier¶
Table Name: terminology_lymphomastagevaluemodifier
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to LymphomaStageValueModifier |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Clin Or Path Modifier¶
Table Name: terminology_clinorpathmodifier
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ClinOrPathModifier |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Breslow Depth Stage¶
Table Name: terminology_breslowdepthstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to BreslowDepthStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Clark Level¶
Table Name: terminology_clarklevel
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ClarkLevel |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Myeloma Iss Stage¶
Table Name: terminology_myelomaissstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to MyelomaISSStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Myeloma Riss Stage¶
Table Name: terminology_myelomarissstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to MyelomaRISSStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Neuroblastoma Inss Stage¶
Table Name: terminology_neuroblastomainssstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to NeuroblastomaINSSStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Neuroblastoma Inrgss Stage¶
Table Name: terminology_neuroblastomainrgssstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to NeuroblastomaINRGSSStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Gleason Grade Group Stage¶
Table Name: terminology_gleasongradegroupstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to GleasonGradeGroupStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Wilms Tumor Stage¶
Table Name: terminology_wilmstumorstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to WilmsTumorStage |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Rhabdomyosarcoma Clinical Group¶
Table Name: terminology_rhabdomyosarcomaclinicalgroup
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RhabdomyosarcomaClinicalGroup |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tumor Marker Analyte¶
Table Name: terminology_tumormarkeranalyte
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TumorMarkerAnalyte |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Race¶
Table Name: terminology_race
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to Race |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Birth Sex¶
Table Name: terminology_birthsex
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to BirthSex |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Smoking Status¶
Table Name: terminology_smokingstatus
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to SmokingStatus |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cause Of Death¶
Table Name: terminology_causeofdeath
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CauseOfDeath |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Adverse Event Term¶
Table Name: terminology_adverseeventterm
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdverseEventTerm |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Structural Variant Analysis Method¶
Table Name: terminology_structuralvariantanalysismethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to StructuralVariantAnalysisMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Gene¶
Table Name: terminology_gene
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to Gene |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Gene Exon¶
Table Name: terminology_geneexon
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
gene |
ForeignKey |
Gene | ForeignKey to Gene |
REQUIRED |
rank |
integer |
Rank | REQUIRED | |
coding_dna_region |
integerrange |
Coding dna region | REQUIRED | |
coding_genomic_region |
integerrange |
Coding genomic region | REQUIRED |
Reference Genome Build¶
Table Name: terminology_referencegenomebuild
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ReferenceGenomeBuild |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Dna Change Type¶
Table Name: terminology_dnachangetype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to DnaChangeType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Genetic Variant Source¶
Table Name: terminology_geneticvariantsource
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to GeneticVariantSource |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Zygosity¶
Table Name: terminology_zygosity
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to Zygosity |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Variant Inheritance¶
Table Name: terminology_variantinheritance
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to VariantInheritance |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Chromosome Identifier¶
Table Name: terminology_chromosomeidentifier
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ChromosomeIdentifier |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Amino Acid Change Type¶
Table Name: terminology_aminoacidchangetype
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AminoAcidChangeType |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Molecular Consequence¶
Table Name: terminology_molecularconsequence
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to MolecularConsequence |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Genomic Coordinate System¶
Table Name: terminology_genomiccoordinatesystem
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to GenomicCoordinateSystem |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Microsatellite Instability State¶
Table Name: terminology_microsatelliteinstabilitystate
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to MicrosatelliteInstabilityState |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Adjunctive Therapy Role¶
Table Name: terminology_adjunctivetherapyrole
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdjunctiveTherapyRole |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Treatment Response Observation Method¶
Table Name: terminology_cancertreatmentresponseobservationmethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerTreatmentResponseObservationMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Treatment Response¶
Table Name: terminology_cancertreatmentresponse
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerTreatmentResponse |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Tumor Board Recommendation¶
Table Name: terminology_tumorboardrecommendation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TumorBoardRecommendation |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Molecular Tumor Board Recommendation¶
Table Name: terminology_tumorboardrecommendation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to TumorBoardRecommendation |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Ic D10 Condition¶
Table Name: terminology_icd10condition
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ICD10Condition |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Expected Drug Action¶
Table Name: terminology_expecteddrugaction
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ExpectedDrugAction |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Recreational Drug¶
Table Name: terminology_recreationaldrug
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to RecreationalDrug |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Exposure Agent¶
Table Name: terminology_exposureagent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to ExposureAgent |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Adverse Event Mitigation Treatment Adjustment¶
Table Name: terminology_adverseeventmitigationtreatmentadjustment
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdverseEventMitigationTreatmentAdjustment |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Adverse Event Mitigation Drug¶
Table Name: terminology_adverseeventmitigationdrug
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdverseEventMitigationDrug |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Adverse Event Mitigation Procedure¶
Table Name: terminology_adverseeventmitigationprocedure
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdverseEventMitigationProcedure |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Adverse Event Mitigation Management¶
Table Name: terminology_adverseeventmitigationmanagement
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to AdverseEventMitigationManagement |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Risk Assessment Method¶
Table Name: terminology_cancerriskassessmentmethod
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerRiskAssessmentMethod |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Cancer Risk Assessment Classification¶
Table Name: terminology_cancerriskassessmentclassification
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
code |
char |
Code as defined in the code system | REQUIRED | |
display |
char |
Human-readable representation defined by the system | NULLABLE | |
system |
char |
Canonical URL of the code system | NULLABLE | |
version |
char |
Version of the code system | NULLABLE | |
synonyms |
array |
Synonyms | REQUIRED | |
parent |
ForeignKey |
Parent | ForeignKey to CancerRiskAssessmentClassification |
NULLABLE |
definition |
text |
Definition | NULLABLE | |
properties |
json |
Properties | NULLABLE |
Oncology Tables¶
Patient Case¶
Table Name: oncology_patientcase
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
pseudoidentifier |
char |
Pseudoidentifier of the patient | UNIQUE, REQUIRED | |
clinical_center |
char |
Medical center where the patient data originally resides | REQUIRED | |
clinical_identifier |
char |
Unique clinical identifier (typically the clinical information system identifier) unique for a physical patient | REQUIRED | |
consent_status |
char |
Status of the general consent by the patient for the use of their data for research purposes | REQUIRED | |
gender |
ForeignKey |
Gender of the patient for legal/administrative purposes | ForeignKey to AdministrativeGender |
REQUIRED |
race |
ForeignKey |
Race of the patient | ForeignKey to Race |
NULLABLE |
sex_at_birth |
ForeignKey |
Sex assigned at birth | ForeignKey to BirthSex |
NULLABLE |
gender_identity |
ForeignKey |
The patient's innate sense of their gender as reported | ForeignKey to GenderIdentity |
NULLABLE |
date_of_birth |
date |
Anonymized date of birth (year/month). The day is set to the first day of the month by convention. | REQUIRED | |
vital_status |
char |
Whether the patient is known to be alive or decaeased or is unknkown. | REQUIRED | |
date_of_death |
date |
Anonymized date of death (year/month). The day is set to the first day of the month by convention. | NULLABLE | |
cause_of_death |
ForeignKey |
Classification of the cause of death. | ForeignKey to CauseOfDeath |
NULLABLE |
end_of_records |
date |
Date of the last known record about the patient if lost to followup or vital status is unknown. | NULLABLE |
Patient Case Event¶
Table Name: oncology_patientcaseevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to PatientCase |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
pseudoidentifier |
char |
Pseudoidentifier of the patient | REQUIRED | |
clinical_center |
char |
Medical center where the patient data originally resides | REQUIRED | |
clinical_identifier |
char |
Unique clinical identifier (typically the clinical information system identifier) unique for a physical patient | REQUIRED | |
consent_status |
char |
Status of the general consent by the patient for the use of their data for research purposes | REQUIRED | |
gender |
ForeignKey |
Gender of the patient for legal/administrative purposes | ForeignKey to AdministrativeGender |
REQUIRED |
race |
ForeignKey |
Race of the patient | ForeignKey to Race |
NULLABLE |
sex_at_birth |
ForeignKey |
Sex assigned at birth | ForeignKey to BirthSex |
NULLABLE |
gender_identity |
ForeignKey |
The patient's innate sense of their gender as reported | ForeignKey to GenderIdentity |
NULLABLE |
date_of_birth |
date |
Anonymized date of birth (year/month). The day is set to the first day of the month by convention. | REQUIRED | |
vital_status |
char |
Whether the patient is known to be alive or decaeased or is unknkown. | REQUIRED | |
date_of_death |
date |
Anonymized date of death (year/month). The day is set to the first day of the month by convention. | NULLABLE | |
cause_of_death |
ForeignKey |
Classification of the cause of death. | ForeignKey to CauseOfDeath |
NULLABLE |
end_of_records |
date |
Date of the last known record about the patient if lost to followup or vital status is unknown. | NULLABLE |
Patient Case Data Completion¶
Table Name: oncology_patientcasedatacompletion
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Patient case who's data category has been marked as completed. | ForeignKey to PatientCase |
REQUIRED |
category |
char |
Indicates the categories of a patient case, whose data entries are deemed to be complete and/or up-to-date with the primary records. |
Patient Case Data Completion Event¶
Table Name: oncology_patientcasedatacompletionevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to PatientCaseDataCompletion |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Patient case who's data category has been marked as completed. | ForeignKey to PatientCase |
REQUIRED |
category |
char |
Indicates the categories of a patient case, whose data entries are deemed to be complete and/or up-to-date with the primary records. |
Neoplastic Entity¶
Table Name: oncology_neoplasticentity
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's neoplasm(s) are recorded | ForeignKey to PatientCase |
REQUIRED |
relationship |
char |
Relationship linking secondary and recurrent tumors to their primary origin or for distinguishing between different phases of the disease. | REQUIRED | |
related_primary |
ForeignKey |
Reference to the primary neoplasm of which the neoplasm(s) originated from. | ForeignKey to NeoplasticEntity |
NULLABLE |
assertion_date |
date |
The date on which the existence of the neoplasm(s) was first asserted or acknowledged | REQUIRED | |
topography |
ForeignKey |
Anatomical location of the neoplasm(s) | ForeignKey to CancerTopography |
REQUIRED |
morphology |
ForeignKey |
Describes the cell type of the tumor and its biologic activity, in other words, the characteristics of the tumor itself | ForeignKey to CancerMorphology |
REQUIRED |
differentitation |
ForeignKey |
Morphologic differentitation characteristics of the neoplasm(s) | ForeignKey to HistologyDifferentiation |
NULLABLE |
laterality |
ForeignKey |
Laterality qualifier for the location of the neoplasm(s) | ForeignKey to LateralityQualifier |
NULLABLE |
Neoplastic Entity Event¶
Table Name: oncology_neoplasticentityevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to NeoplasticEntity |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's neoplasm(s) are recorded | ForeignKey to PatientCase |
REQUIRED |
relationship |
char |
Relationship linking secondary and recurrent tumors to their primary origin or for distinguishing between different phases of the disease. | REQUIRED | |
related_primary |
ForeignKey |
Reference to the primary neoplasm of which the neoplasm(s) originated from. | ForeignKey to NeoplasticEntity |
NULLABLE |
assertion_date |
date |
The date on which the existence of the neoplasm(s) was first asserted or acknowledged | REQUIRED | |
topography |
ForeignKey |
Anatomical location of the neoplasm(s) | ForeignKey to CancerTopography |
REQUIRED |
morphology |
ForeignKey |
Describes the cell type of the tumor and its biologic activity, in other words, the characteristics of the tumor itself | ForeignKey to CancerMorphology |
REQUIRED |
differentitation |
ForeignKey |
Morphologic differentitation characteristics of the neoplasm(s) | ForeignKey to HistologyDifferentiation |
NULLABLE |
laterality |
ForeignKey |
Laterality qualifier for the location of the neoplasm(s) | ForeignKey to LateralityQualifier |
NULLABLE |
Treatment Response¶
Table Name: oncology_treatmentresponse
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's treatment response is asseessed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date of the treatment response assessment | REQUIRED | |
recist |
ForeignKey |
The classification of the treatment response according to RECIST | ForeignKey to CancerTreatmentResponse |
REQUIRED |
recist_interpreted |
boolean |
Indicates whether the RECIST value was interpreted or taken from the radiology report | NULLABLE | |
methodology |
ForeignKey |
Method used to assess and classify the treatment response | ForeignKey to CancerTreatmentResponseObservationMethod |
REQUIRED |
assessed_entities |
manytomany |
References to the neoplastic entities that were assesed for treatment response | ManyToMany with NeoplasticEntity |
REQUIRED |
assessed_bodysites |
manytomany |
Anatomical location assessed to determine the treatment response | ManyToMany with ObservationBodySite |
Treatment Response Event¶
Table Name: oncology_treatmentresponseevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TreatmentResponse |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's treatment response is asseessed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date of the treatment response assessment | REQUIRED | |
recist |
ForeignKey |
The classification of the treatment response according to RECIST | ForeignKey to CancerTreatmentResponse |
REQUIRED |
recist_interpreted |
boolean |
Indicates whether the RECIST value was interpreted or taken from the radiology report | NULLABLE | |
methodology |
ForeignKey |
Method used to assess and classify the treatment response | ForeignKey to CancerTreatmentResponseObservationMethod |
REQUIRED |
Therapy Line¶
Table Name: oncology_therapyline
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient to whom this therapy line is associated | ForeignKey to PatientCase |
REQUIRED |
ordinal |
positiveinteger |
Number indicating the sequence in which this block of treatments were administered to the patient | REQUIRED | |
intent |
char |
Treatment intent of the system therapy | REQUIRED | |
progression_date |
date |
Date at which progression was first detected, if applicable | NULLABLE | |
label |
char |
Label |
Therapy Line Event¶
Table Name: oncology_therapylineevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TherapyLine |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient to whom this therapy line is associated | ForeignKey to PatientCase |
REQUIRED |
ordinal |
positiveinteger |
Number indicating the sequence in which this block of treatments were administered to the patient | REQUIRED | |
intent |
char |
Treatment intent of the system therapy | REQUIRED | |
progression_date |
date |
Date at which progression was first detected, if applicable | NULLABLE | |
label |
char |
Label |
Systemic Therapy¶
Table Name: oncology_systemictherapy
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who received the systemic therapy | ForeignKey to PatientCase |
REQUIRED |
period |
daterange |
Clinically-relevant period during which the therapy was administered to the patient. | REQUIRED | |
cycles |
positiveinteger |
The total number of treatment cycles during the treatment period. | NULLABLE | |
intent |
char |
Treatment intent of the system therapy | REQUIRED | |
adjunctive_role |
ForeignKey |
Indicates the role of the adjunctive therapy (if applicable). | ForeignKey to AdjunctiveTherapyRole |
NULLABLE |
is_adjunctive |
boolean |
Indicates whether it is adjunctive therapy instead of a primary therapy | ||
termination_reason |
ForeignKey |
Explanation for the premature or planned termination of the systemic therapy | ForeignKey to TreatmentTerminationReason |
NULLABLE |
therapy_line |
ForeignKey |
Therapy line to which the systemic therapy is assigned to | ForeignKey to TherapyLine |
NULLABLE |
targeted_entities |
manytomany |
References to the neoplastic entities that were targeted by the systemic therapy | ManyToMany with NeoplasticEntity |
REQUIRED |
Systemic Therapy Event¶
Table Name: oncology_systemictherapyevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to SystemicTherapy |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who received the systemic therapy | ForeignKey to PatientCase |
REQUIRED |
period |
daterange |
Clinically-relevant period during which the therapy was administered to the patient. | REQUIRED | |
cycles |
positiveinteger |
The total number of treatment cycles during the treatment period. | NULLABLE | |
intent |
char |
Treatment intent of the system therapy | REQUIRED | |
adjunctive_role |
ForeignKey |
Indicates the role of the adjunctive therapy (if applicable). | ForeignKey to AdjunctiveTherapyRole |
NULLABLE |
is_adjunctive |
boolean |
Indicates whether it is adjunctive therapy instead of a primary therapy | ||
termination_reason |
ForeignKey |
Explanation for the premature or planned termination of the systemic therapy | ForeignKey to TreatmentTerminationReason |
NULLABLE |
therapy_line |
ForeignKey |
Therapy line to which the systemic therapy is assigned to | ForeignKey to TherapyLine |
NULLABLE |
Systemic Therapy Medication¶
Table Name: oncology_systemictherapymedication
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
systemic_therapy |
ForeignKey |
The systemic therapy to which this medication belongs to | ForeignKey to SystemicTherapy |
REQUIRED |
drug |
ForeignKey |
Antineoplastic drug/medication administered to the patient | ForeignKey to AntineoplasticAgent |
REQUIRED |
route |
ForeignKey |
Drug administration route | ForeignKey to DosageRoute |
NULLABLE |
used_offlabel |
boolean |
Indicates whether a medication was used off-label at the time of administration | NULLABLE | |
within_soc |
boolean |
Indicates whether a medication was within standard of care (SOC) at the time of administration. | NULLABLE | |
dosage_mass_concentration |
float |
Dosage of the medication expressed in mass concentration (if revelant/appliccable) | NULLABLE | |
dosage_mass |
float |
Dosage of the medication expressed in a fixed mass (if revelant/appliccable) | NULLABLE | |
dosage_volume |
float |
Dosage of the medication expressed in a volume (if revelant/appliccable) | NULLABLE | |
dosage_mass_surface |
float |
Dosage of the medication expressed in a mass per body surface area (if revelant/appliccable) | NULLABLE | |
dosage_rate_mass_concentration |
float |
Dosage rate of the medication expressed in mass concentration (if revelant/appliccable) | NULLABLE | |
dosage_rate_mass |
float |
Dosage rate of the medication expressed in a fixed mass (if revelant/appliccable) | NULLABLE | |
dosage_rate_volume |
float |
Dosage rate of the medication expressed in a volume (if revelant/appliccable) | NULLABLE | |
dosage_rate_mass_surface |
float |
Dosage rate of the medication expressed in a mass per body surface area (if revelant/appliccable) | NULLABLE |
Systemic Therapy Medication Event¶
Table Name: oncology_systemictherapymedicationevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to SystemicTherapyMedication |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
systemic_therapy |
ForeignKey |
The systemic therapy to which this medication belongs to | ForeignKey to SystemicTherapy |
REQUIRED |
drug |
ForeignKey |
Antineoplastic drug/medication administered to the patient | ForeignKey to AntineoplasticAgent |
REQUIRED |
route |
ForeignKey |
Drug administration route | ForeignKey to DosageRoute |
NULLABLE |
used_offlabel |
boolean |
Indicates whether a medication was used off-label at the time of administration | NULLABLE | |
within_soc |
boolean |
Indicates whether a medication was within standard of care (SOC) at the time of administration. | NULLABLE | |
dosage_mass_concentration |
float |
Dosage of the medication expressed in mass concentration (if revelant/appliccable) | NULLABLE | |
dosage_mass |
float |
Dosage of the medication expressed in a fixed mass (if revelant/appliccable) | NULLABLE | |
dosage_volume |
float |
Dosage of the medication expressed in a volume (if revelant/appliccable) | NULLABLE | |
dosage_mass_surface |
float |
Dosage of the medication expressed in a mass per body surface area (if revelant/appliccable) | NULLABLE | |
dosage_rate_mass_concentration |
float |
Dosage rate of the medication expressed in mass concentration (if revelant/appliccable) | NULLABLE | |
dosage_rate_mass |
float |
Dosage rate of the medication expressed in a fixed mass (if revelant/appliccable) | NULLABLE | |
dosage_rate_volume |
float |
Dosage rate of the medication expressed in a volume (if revelant/appliccable) | NULLABLE | |
dosage_rate_mass_surface |
float |
Dosage rate of the medication expressed in a mass per body surface area (if revelant/appliccable) | NULLABLE |
Radiotherapy¶
Table Name: oncology_radiotherapy
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who received the radiotherapy | ForeignKey to PatientCase |
REQUIRED |
period |
daterange |
Clinically-relevant period during which the radiotherapy was administered to the patient. | REQUIRED | |
sessions |
positiveinteger |
The total number of radiotherapy sessions over the treatment period. | REQUIRED | |
intent |
char |
Treatment intent of the system therapy | REQUIRED | |
termination_reason |
ForeignKey |
Explanation for the premature or planned termination of the radiotherapy | ForeignKey to TreatmentTerminationReason |
NULLABLE |
therapy_line |
ForeignKey |
Therapy line to which the radiotherapy is assigned to | ForeignKey to TherapyLine |
NULLABLE |
targeted_entities |
manytomany |
References to the neoplastic entities that were targeted by the radiotherapy | ManyToMany with NeoplasticEntity |
REQUIRED |
Radiotherapy Event¶
Table Name: oncology_radiotherapyevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Radiotherapy |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who received the radiotherapy | ForeignKey to PatientCase |
REQUIRED |
period |
daterange |
Clinically-relevant period during which the radiotherapy was administered to the patient. | REQUIRED | |
sessions |
positiveinteger |
The total number of radiotherapy sessions over the treatment period. | REQUIRED | |
intent |
char |
Treatment intent of the system therapy | REQUIRED | |
termination_reason |
ForeignKey |
Explanation for the premature or planned termination of the radiotherapy | ForeignKey to TreatmentTerminationReason |
NULLABLE |
therapy_line |
ForeignKey |
Therapy line to which the radiotherapy is assigned to | ForeignKey to TherapyLine |
NULLABLE |
Radiotherapy Dosage¶
Table Name: oncology_radiotherapydosage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
radiotherapy |
ForeignKey |
Indicates the radoptherapy where this dosage was delivered | ForeignKey to Radiotherapy |
REQUIRED |
fractions |
positiveinteger |
The total number of radiotherapy fractions delivered over the treatment period. | NULLABLE | |
dose |
float |
Total radiation dose delivered over the full radiotherapy course | NULLABLE | |
irradiated_volume |
ForeignKey |
Anatomical location of the irradiated volume | ForeignKey to RadiotherapyTreatmentLocation |
REQUIRED |
irradiated_volume_morphology |
ForeignKey |
Morphology of the anatomical location of the irradiated volume | ForeignKey to RadiotherapyVolumeType |
NULLABLE |
irradiated_volume_qualifier |
ForeignKey |
General qualifier for the anatomical location of the irradiated volume | ForeignKey to RadiotherapyTreatmentLocationQualifier |
NULLABLE |
Radiotherapy Dosage Event¶
Table Name: oncology_radiotherapydosageevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to RadiotherapyDosage |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
radiotherapy |
ForeignKey |
Indicates the radoptherapy where this dosage was delivered | ForeignKey to Radiotherapy |
REQUIRED |
fractions |
positiveinteger |
The total number of radiotherapy fractions delivered over the treatment period. | NULLABLE | |
dose |
float |
Total radiation dose delivered over the full radiotherapy course | NULLABLE | |
irradiated_volume |
ForeignKey |
Anatomical location of the irradiated volume | ForeignKey to RadiotherapyTreatmentLocation |
REQUIRED |
irradiated_volume_morphology |
ForeignKey |
Morphology of the anatomical location of the irradiated volume | ForeignKey to RadiotherapyVolumeType |
NULLABLE |
irradiated_volume_qualifier |
ForeignKey |
General qualifier for the anatomical location of the irradiated volume | ForeignKey to RadiotherapyTreatmentLocationQualifier |
NULLABLE |
Radiotherapy Setting¶
Table Name: oncology_radiotherapysetting
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
radiotherapy |
ForeignKey |
Indicates the radoptherapy where this dosage was delivered | ForeignKey to Radiotherapy |
REQUIRED |
modality |
ForeignKey |
Modality of external beam or brachytherapy radiation procedures | ForeignKey to RadiotherapyModality |
REQUIRED |
technique |
ForeignKey |
Technique of external beam or brachytherapy radiation procedures | ForeignKey to RadiotherapyTechnique |
REQUIRED |
Radiotherapy Setting Event¶
Table Name: oncology_radiotherapysettingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to RadiotherapySetting |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
radiotherapy |
ForeignKey |
Indicates the radoptherapy where this dosage was delivered | ForeignKey to Radiotherapy |
REQUIRED |
modality |
ForeignKey |
Modality of external beam or brachytherapy radiation procedures | ForeignKey to RadiotherapyModality |
REQUIRED |
technique |
ForeignKey |
Technique of external beam or brachytherapy radiation procedures | ForeignKey to RadiotherapyTechnique |
REQUIRED |
Surgery¶
Table Name: oncology_surgery
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who received the surgical procedure | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date of the surgical procedure. | REQUIRED | |
procedure |
ForeignKey |
The specific surgical procedure that was performed | ForeignKey to SurgicalProcedure |
REQUIRED |
intent |
char |
Therapeutic intent of the surgery | REQUIRED | |
bodysite |
ForeignKey |
Anatomical location of the surgery | ForeignKey to CancerTopography |
NULLABLE |
bodysite_qualifier |
ForeignKey |
General qualifier for the anatomical location of the surgery | ForeignKey to BodyLocationQualifier |
NULLABLE |
bodysite_laterality |
ForeignKey |
Laterality for the anatomical location of the surgery | ForeignKey to LateralityQualifier |
NULLABLE |
outcome |
ForeignKey |
The outcome of the surgery | ForeignKey to ProcedureOutcome |
NULLABLE |
therapy_line |
ForeignKey |
Therapy line to which the surgery is assigned to | ForeignKey to TherapyLine |
NULLABLE |
targeted_entities |
manytomany |
References to the neoplastic entities that were targeted by the surgery | ManyToMany with NeoplasticEntity |
REQUIRED |
Surgery Event¶
Table Name: oncology_surgeryevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Surgery |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who received the surgical procedure | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date of the surgical procedure. | REQUIRED | |
procedure |
ForeignKey |
The specific surgical procedure that was performed | ForeignKey to SurgicalProcedure |
REQUIRED |
intent |
char |
Therapeutic intent of the surgery | REQUIRED | |
bodysite |
ForeignKey |
Anatomical location of the surgery | ForeignKey to CancerTopography |
NULLABLE |
bodysite_qualifier |
ForeignKey |
General qualifier for the anatomical location of the surgery | ForeignKey to BodyLocationQualifier |
NULLABLE |
bodysite_laterality |
ForeignKey |
Laterality for the anatomical location of the surgery | ForeignKey to LateralityQualifier |
NULLABLE |
outcome |
ForeignKey |
The outcome of the surgery | ForeignKey to ProcedureOutcome |
NULLABLE |
therapy_line |
ForeignKey |
Therapy line to which the surgery is assigned to | ForeignKey to TherapyLine |
NULLABLE |
Adverse Event¶
Table Name: oncology_adverseevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who had the adverse event being recorded | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the adverse event ocurred. | REQUIRED | |
event |
ForeignKey |
Classification of the adverse event using CTCAE criteria | ForeignKey to AdverseEventTerm |
REQUIRED |
grade |
positivesmallinteger |
The grade associated with the severity of an adverse event, using CTCAE criteria. | REQUIRED | |
outcome |
char |
The date when the adverse event ended or returned to baseline. | REQUIRED | |
date_resolved |
date |
The date when the adverse event ended or returned to baseline. | NULLABLE | |
is_resolved |
boolean |
Indicates whether the adverse event has been resolved |
Adverse Event Event¶
Table Name: oncology_adverseeventevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to AdverseEvent |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who had the adverse event being recorded | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the adverse event ocurred. | REQUIRED | |
event |
ForeignKey |
Classification of the adverse event using CTCAE criteria | ForeignKey to AdverseEventTerm |
REQUIRED |
grade |
positivesmallinteger |
The grade associated with the severity of an adverse event, using CTCAE criteria. | REQUIRED | |
outcome |
char |
The date when the adverse event ended or returned to baseline. | REQUIRED | |
date_resolved |
date |
The date when the adverse event ended or returned to baseline. | NULLABLE | |
is_resolved |
boolean |
Indicates whether the adverse event has been resolved |
Adverse Event Suspected Cause¶
Table Name: oncology_adverseeventsuspectedcause
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
adverse_event |
ForeignKey |
Adverse event to which this suspected cause belongs to | ForeignKey to AdverseEvent |
REQUIRED |
systemic_therapy |
ForeignKey |
Systemic therapy suspected to be the cause of the adverse event | ForeignKey to SystemicTherapy |
NULLABLE |
medication |
ForeignKey |
Systemic therapy medication suspected to be the cause of the adverse event | ForeignKey to SystemicTherapyMedication |
NULLABLE |
radiotherapy |
ForeignKey |
Radiotherapy suspected to be the cause of the adverse event | ForeignKey to Radiotherapy |
NULLABLE |
surgery |
ForeignKey |
Surgery suspected to be the cause of the adverse event | ForeignKey to Surgery |
NULLABLE |
causality |
char |
Assessment of the potential causality | NULLABLE |
Adverse Event Suspected Cause Event¶
Table Name: oncology_adverseeventsuspectedcauseevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to AdverseEventSuspectedCause |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
adverse_event |
ForeignKey |
Adverse event to which this suspected cause belongs to | ForeignKey to AdverseEvent |
REQUIRED |
systemic_therapy |
ForeignKey |
Systemic therapy suspected to be the cause of the adverse event | ForeignKey to SystemicTherapy |
NULLABLE |
medication |
ForeignKey |
Systemic therapy medication suspected to be the cause of the adverse event | ForeignKey to SystemicTherapyMedication |
NULLABLE |
radiotherapy |
ForeignKey |
Radiotherapy suspected to be the cause of the adverse event | ForeignKey to Radiotherapy |
NULLABLE |
surgery |
ForeignKey |
Surgery suspected to be the cause of the adverse event | ForeignKey to Surgery |
NULLABLE |
causality |
char |
Assessment of the potential causality | NULLABLE |
Adverse Event Mitigation¶
Table Name: oncology_adverseeventmitigation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
adverse_event |
ForeignKey |
Adverse event to which this mitigation belongs to | ForeignKey to AdverseEvent |
REQUIRED |
category |
char |
Type of mitigation employed | REQUIRED | |
adjustment |
ForeignKey |
Classification of the adjustment of systemic anti-cancer treatment used to mitigate the adverse event (if applicable) | ForeignKey to AdverseEventMitigationTreatmentAdjustment |
NULLABLE |
drug |
ForeignKey |
Classification of the pharmacological treatment used to mitigate the adverse event (if applicable) | ForeignKey to AdverseEventMitigationDrug |
NULLABLE |
procedure |
ForeignKey |
Classification of the non-pharmacological procedure used to mitigate the adverse event (if applicable) | ForeignKey to AdverseEventMitigationProcedure |
NULLABLE |
management |
ForeignKey |
Management type of the adverse event mitigation | ForeignKey to AdverseEventMitigationManagement |
NULLABLE |
Adverse Event Mitigation Event¶
Table Name: oncology_adverseeventmitigationevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to AdverseEventMitigation |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
adverse_event |
ForeignKey |
Adverse event to which this mitigation belongs to | ForeignKey to AdverseEvent |
REQUIRED |
category |
char |
Type of mitigation employed | REQUIRED | |
adjustment |
ForeignKey |
Classification of the adjustment of systemic anti-cancer treatment used to mitigate the adverse event (if applicable) | ForeignKey to AdverseEventMitigationTreatmentAdjustment |
NULLABLE |
drug |
ForeignKey |
Classification of the pharmacological treatment used to mitigate the adverse event (if applicable) | ForeignKey to AdverseEventMitigationDrug |
NULLABLE |
procedure |
ForeignKey |
Classification of the non-pharmacological procedure used to mitigate the adverse event (if applicable) | ForeignKey to AdverseEventMitigationProcedure |
NULLABLE |
management |
ForeignKey |
Management type of the adverse event mitigation | ForeignKey to AdverseEventMitigationManagement |
NULLABLE |
Comorbidities Assessment¶
Table Name: oncology_comorbiditiesassessment
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's comorbidities are being recorded | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's comorbidities were assessed and recorded. | REQUIRED | |
index_condition |
ForeignKey |
The primary neoplastic entity against which comorbidities are assessed | ForeignKey to NeoplasticEntity |
REQUIRED |
panel |
char |
Comorbidities panel | NULLABLE | |
present_conditions |
manytomany |
Present comorbid conditions | ManyToMany with ICD10Condition |
|
absent_conditions |
manytomany |
Absent comorbid conditions | ManyToMany with ICD10Condition |
Comorbidities Assessment Event¶
Table Name: oncology_comorbiditiesassessmentevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to ComorbiditiesAssessment |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's comorbidities are being recorded | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's comorbidities were assessed and recorded. | REQUIRED | |
index_condition |
ForeignKey |
The primary neoplastic entity against which comorbidities are assessed | ForeignKey to NeoplasticEntity |
REQUIRED |
panel |
char |
Comorbidities panel | NULLABLE |
Family History¶
Table Name: oncology_familyhistory
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's family's history is being recorded | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's family history was assessed and recorded. | REQUIRED | |
relationship |
ForeignKey |
Relationship to the patient | ForeignKey to FamilyMemberType |
REQUIRED |
had_cancer |
boolean |
Whether the family member has a history of cancer | REQUIRED | |
contributed_to_death |
boolean |
Whether the cancer contributed to the cause of death of the family member | NULLABLE | |
onset_age |
positivesmallinteger |
Age at which the family member's cancer manifested | NULLABLE | |
topography |
ForeignKey |
Estimated or actual topography of the family member's cancer | ForeignKey to CancerTopography |
NULLABLE |
morphology |
ForeignKey |
Morphology of the family member's cancer (if known) | ForeignKey to CancerMorphology |
NULLABLE |
Family History Event¶
Table Name: oncology_familyhistoryevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to FamilyHistory |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's family's history is being recorded | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's family history was assessed and recorded. | REQUIRED | |
relationship |
ForeignKey |
Relationship to the patient | ForeignKey to FamilyMemberType |
REQUIRED |
had_cancer |
boolean |
Whether the family member has a history of cancer | REQUIRED | |
contributed_to_death |
boolean |
Whether the cancer contributed to the cause of death of the family member | NULLABLE | |
onset_age |
positivesmallinteger |
Age at which the family member's cancer manifested | NULLABLE | |
topography |
ForeignKey |
Estimated or actual topography of the family member's cancer | ForeignKey to CancerTopography |
NULLABLE |
morphology |
ForeignKey |
Morphology of the family member's cancer (if known) | ForeignKey to CancerMorphology |
NULLABLE |
Genomic Signature¶
Table Name: oncology_genomicsignature
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED |
Genomic Signature Event¶
Table Name: oncology_genomicsignatureevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to GenomicSignature |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED |
Tumor Mutational Burden¶
Table Name: oncology_tumormutationalburden
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED | |
genomic_signature |
onetoone |
Genomic signature | ForeignKey to GenomicSignature |
PRIMARY KEY, UNIQUE, REQUIRED |
value |
float |
The actual tumor mutational burden (TMB) value in mutations/Mb | REQUIRED | |
status |
char |
Cclassification of the tumor mutational burden (TMB) status | NULLABLE |
Tumor Mutational Burden Event¶
Table Name: oncology_tumormutationalburdenevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TumorMutationalBurden |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
genomic_signature |
ForeignKey |
Genomic signature | ForeignKey to GenomicSignature |
REQUIRED |
value |
float |
The actual tumor mutational burden (TMB) value in mutations/Mb | REQUIRED | |
status |
char |
Cclassification of the tumor mutational burden (TMB) status | NULLABLE |
Loss Of Heterozygosity¶
Table Name: oncology_lossofheterozygosity
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED | |
genomic_signature |
onetoone |
Genomic signature | ForeignKey to GenomicSignature |
PRIMARY KEY, UNIQUE, REQUIRED |
value |
float |
Loss of heterozygosity (LOH) as a percentage | REQUIRED |
Loss Of Heterozygosity Event¶
Table Name: oncology_lossofheterozygosityevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to LossOfHeterozygosity |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
genomic_signature |
ForeignKey |
Genomic signature | ForeignKey to GenomicSignature |
REQUIRED |
value |
float |
Loss of heterozygosity (LOH) as a percentage | REQUIRED |
Microsatellite Instability¶
Table Name: oncology_microsatelliteinstability
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED | |
genomic_signature |
onetoone |
Genomic signature | ForeignKey to GenomicSignature |
PRIMARY KEY, UNIQUE, REQUIRED |
value |
ForeignKey |
Microsatellite instability (MSI) classification | ForeignKey to MicrosatelliteInstabilityState |
REQUIRED |
Microsatellite Instability Event¶
Table Name: oncology_microsatelliteinstabilityevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to MicrosatelliteInstability |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
genomic_signature |
ForeignKey |
Genomic signature | ForeignKey to GenomicSignature |
REQUIRED |
value |
ForeignKey |
Microsatellite instability (MSI) classification | ForeignKey to MicrosatelliteInstabilityState |
REQUIRED |
Homologous Recombination Deficiency¶
Table Name: oncology_homologousrecombinationdeficiency
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED | |
genomic_signature |
onetoone |
Genomic signature | ForeignKey to GenomicSignature |
PRIMARY KEY, UNIQUE, REQUIRED |
value |
float |
Homologous recombination deficiency (HRD) score value | NULLABLE | |
interpretation |
char |
Homologous recombination deficiency (HRD) interpretation | NULLABLE |
Homologous Recombination Deficiency Event¶
Table Name: oncology_homologousrecombinationdeficiencyevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to HomologousRecombinationDeficiency |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
genomic_signature |
ForeignKey |
Genomic signature | ForeignKey to GenomicSignature |
REQUIRED |
value |
float |
Homologous recombination deficiency (HRD) score value | NULLABLE | |
interpretation |
char |
Homologous recombination deficiency (HRD) interpretation | NULLABLE |
Tumor Neoantigen Burden¶
Table Name: oncology_tumorneoantigenburden
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED | |
genomic_signature |
onetoone |
Genomic signature | ForeignKey to GenomicSignature |
PRIMARY KEY, UNIQUE, REQUIRED |
value |
float |
The actual tumor neoantigen burden (TNB) value in neoantigens/Mb | REQUIRED |
Tumor Neoantigen Burden Event¶
Table Name: oncology_tumorneoantigenburdenevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TumorNeoantigenBurden |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
genomic_signature |
ForeignKey |
Genomic signature | ForeignKey to GenomicSignature |
REQUIRED |
value |
float |
The actual tumor neoantigen burden (TNB) value in neoantigens/Mb | REQUIRED |
Aneuploid Score¶
Table Name: oncology_aneuploidscore
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's genomic signature was assessed. | REQUIRED | |
genomic_signature |
onetoone |
Genomic signature | ForeignKey to GenomicSignature |
PRIMARY KEY, UNIQUE, REQUIRED |
value |
smallinteger |
The actual aneuploid score (AS) value in total altered arms | REQUIRED |
Aneuploid Score Event¶
Table Name: oncology_aneuploidscoreevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to AneuploidScore |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
genomic_signature |
ForeignKey |
Genomic signature | ForeignKey to GenomicSignature |
REQUIRED |
value |
smallinteger |
The actual aneuploid score (AS) value in total altered arms | REQUIRED |
Genomic Variant¶
Table Name: oncology_genomicvariant
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who' genomic variant is described | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date of the genomic variant (e.g. the specimen collection date). | REQUIRED | |
assessment_date |
date |
Date at which the genomic variant was assessed and/or reported. | NULLABLE | |
gene_panel |
char |
Commercial or official name of the gene panel tested to identify the variant | NULLABLE | |
assessment |
char |
Classification of whether the variant is present or absent in the analysis results. Relevant for genomic studies that report presence and absence of variants. | NULLABLE | |
confidence |
char |
Classification of the confidence for a true positive variant call based e.g. calling thresholds or phred-scaled confidence scores. | NULLABLE | |
analysis_method |
ForeignKey |
Analysis method used to detect the variant | ForeignKey to StructuralVariantAnalysisMethod |
NULLABLE |
clinical_relevance |
char |
Classification of the clinical relevance or pathogenicity of the variant. | NULLABLE | |
is_vus |
boolean |
Indicates if the variant is of unknown signfiance (determined automatically based on the clinical relevance classification) | NULLABLE | |
is_pathogenic |
boolean |
Indicates if the variant is pathogenic (determined automatically based on the clinical relevance classification) | ||
genome_assembly_version |
ForeignKey |
The reference genome assembly versionused in this analysis. | ForeignKey to ReferenceGenomeBuild |
NULLABLE |
dna_hgvs |
char |
Description of the coding (cDNA) sequence change using a valid HGVS-formatted expression, e.g. NM_005228.5:c.2369C>T | NULLABLE | |
rna_hgvs |
char |
Description of the RNA sequence change using a valid HGVS-formatted expression, e.g. NM_000016.9:r.1212a>c | NULLABLE | |
protein_hgvs |
char |
Description of the amino-acid sequence change using a valid HGVS-formatted expression, e.g. NP_000016.9:p.Leu24Tyr | NULLABLE | |
molecular_consequence |
ForeignKey |
The calculated or observed effect of a variant on its downstream transcript and, if applicable, ensuing protein sequence. | ForeignKey to MolecularConsequence |
NULLABLE |
copy_number |
positivesmallinteger |
Genomic structural variant copy number. It is a unit-less value. Note that a copy number of 1 can imply a deletion. | NULLABLE | |
allele_frequency |
float |
The relative frequency (value in range [0,1]) of the allele at a given locus in the sample. | NULLABLE | |
allele_depth |
positiveinteger |
Specifies the number of reads that identified the allele in question whether it consists of one or a small sequence of contiguous nucleotides. | NULLABLE | |
zygosity |
ForeignKey |
The observed level of occurrence of the variant in the set of chromosomes. | ForeignKey to Zygosity |
NULLABLE |
inheritance |
ForeignKey |
Variant inheritance origin (if known). | ForeignKey to VariantInheritance |
NULLABLE |
coordinate_system |
ForeignKey |
Genomic coordinate system used for identifying nucleotides or amino acids within a sequence. | ForeignKey to GenomicCoordinateSystem |
NULLABLE |
clinvar |
char |
Accession number in the ClinVar variant database, given for cross-reference. | NULLABLE | |
genes |
manytomany |
Gene(s) affected by this variant | ManyToMany with Gene |
REQUIRED |
Genomic Variant Event¶
Table Name: oncology_genomicvariantevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to GenomicVariant |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who' genomic variant is described | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date of the genomic variant (e.g. the specimen collection date). | REQUIRED | |
assessment_date |
date |
Date at which the genomic variant was assessed and/or reported. | NULLABLE | |
gene_panel |
char |
Commercial or official name of the gene panel tested to identify the variant | NULLABLE | |
assessment |
char |
Classification of whether the variant is present or absent in the analysis results. Relevant for genomic studies that report presence and absence of variants. | NULLABLE | |
confidence |
char |
Classification of the confidence for a true positive variant call based e.g. calling thresholds or phred-scaled confidence scores. | NULLABLE | |
analysis_method |
ForeignKey |
Analysis method used to detect the variant | ForeignKey to StructuralVariantAnalysisMethod |
NULLABLE |
clinical_relevance |
char |
Classification of the clinical relevance or pathogenicity of the variant. | NULLABLE | |
is_vus |
boolean |
Indicates if the variant is of unknown signfiance (determined automatically based on the clinical relevance classification) | NULLABLE | |
is_pathogenic |
boolean |
Indicates if the variant is pathogenic (determined automatically based on the clinical relevance classification) | ||
genome_assembly_version |
ForeignKey |
The reference genome assembly versionused in this analysis. | ForeignKey to ReferenceGenomeBuild |
NULLABLE |
dna_hgvs |
char |
Description of the coding (cDNA) sequence change using a valid HGVS-formatted expression, e.g. NM_005228.5:c.2369C>T | NULLABLE | |
rna_hgvs |
char |
Description of the RNA sequence change using a valid HGVS-formatted expression, e.g. NM_000016.9:r.1212a>c | NULLABLE | |
protein_hgvs |
char |
Description of the amino-acid sequence change using a valid HGVS-formatted expression, e.g. NP_000016.9:p.Leu24Tyr | NULLABLE | |
molecular_consequence |
ForeignKey |
The calculated or observed effect of a variant on its downstream transcript and, if applicable, ensuing protein sequence. | ForeignKey to MolecularConsequence |
NULLABLE |
copy_number |
positivesmallinteger |
Genomic structural variant copy number. It is a unit-less value. Note that a copy number of 1 can imply a deletion. | NULLABLE | |
allele_frequency |
float |
The relative frequency (value in range [0,1]) of the allele at a given locus in the sample. | NULLABLE | |
allele_depth |
positiveinteger |
Specifies the number of reads that identified the allele in question whether it consists of one or a small sequence of contiguous nucleotides. | NULLABLE | |
zygosity |
ForeignKey |
The observed level of occurrence of the variant in the set of chromosomes. | ForeignKey to Zygosity |
NULLABLE |
inheritance |
ForeignKey |
Variant inheritance origin (if known). | ForeignKey to VariantInheritance |
NULLABLE |
coordinate_system |
ForeignKey |
Genomic coordinate system used for identifying nucleotides or amino acids within a sequence. | ForeignKey to GenomicCoordinateSystem |
NULLABLE |
clinvar |
char |
Accession number in the ClinVar variant database, given for cross-reference. | NULLABLE |
Lifestyle¶
Table Name: oncology_lifestyle
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's lifetyle was assessed and recorded. | REQUIRED | |
smoking_status |
ForeignKey |
Tobacco consumption status | ForeignKey to SmokingStatus |
NULLABLE |
smoking_packyears |
float |
Smoking pack-years (if applicable) | NULLABLE | |
smoking_quited |
float |
Estimated time since quitting smoking (if applicable) | NULLABLE | |
alcohol_consumption |
ForeignKey |
Frequency of alcohol consumption | ForeignKey to AlcoholConsumptionFrequency |
NULLABLE |
night_sleep |
float |
Estimated average sleep time per night | NULLABLE | |
recreational_drugs |
manytomany |
Any recreational drug(s) used by the patient | ManyToMany with RecreationalDrug |
|
exposures |
manytomany |
Environmental or occupational exposures to hazards or carcinogenic agents | ManyToMany with ExposureAgent |
Lifestyle Event¶
Table Name: oncology_lifestyleevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Lifestyle |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's lifestyle is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the patient's lifetyle was assessed and recorded. | REQUIRED | |
smoking_status |
ForeignKey |
Tobacco consumption status | ForeignKey to SmokingStatus |
NULLABLE |
smoking_packyears |
float |
Smoking pack-years (if applicable) | NULLABLE | |
smoking_quited |
float |
Estimated time since quitting smoking (if applicable) | NULLABLE | |
alcohol_consumption |
ForeignKey |
Frequency of alcohol consumption | ForeignKey to AlcoholConsumptionFrequency |
NULLABLE |
night_sleep |
float |
Estimated average sleep time per night | NULLABLE |
Performance Status¶
Table Name: oncology_performancestatus
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's performance status is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the performance score was performed and recorded. | REQUIRED | |
ecog_score |
positivesmallinteger |
ECOG Performance Status Score | NULLABLE | |
karnofsky_score |
positivesmallinteger |
Karnofsky Performance Status Score | NULLABLE |
Performance Status Event¶
Table Name: oncology_performancestatusevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to PerformanceStatus |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's performance status is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the performance score was performed and recorded. | REQUIRED | |
ecog_score |
positivesmallinteger |
ECOG Performance Status Score | NULLABLE | |
karnofsky_score |
positivesmallinteger |
Karnofsky Performance Status Score | NULLABLE |
Risk Assessment¶
Table Name: oncology_riskassessment
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer risk is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the risk assessment was performed and recorded. | REQUIRED | |
methodology |
ForeignKey |
Indicates the method or type of risk assessment | ForeignKey to CancerRiskAssessmentMethod |
REQUIRED |
risk |
ForeignKey |
Assessed risk | ForeignKey to CancerRiskAssessmentClassification |
REQUIRED |
score |
float |
Quantitative score used to classify the risk | NULLABLE | |
assessed_entities |
manytomany |
References to the neoplastic entities that were assessed to estimate the risk. | ManyToMany with NeoplasticEntity |
REQUIRED |
Risk Assessment Event¶
Table Name: oncology_riskassessmentevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to RiskAssessment |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer risk is assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the risk assessment was performed and recorded. | REQUIRED | |
methodology |
ForeignKey |
Indicates the method or type of risk assessment | ForeignKey to CancerRiskAssessmentMethod |
REQUIRED |
risk |
ForeignKey |
Assessed risk | ForeignKey to CancerRiskAssessmentClassification |
REQUIRED |
score |
float |
Quantitative score used to classify the risk | NULLABLE |
Staging¶
Table Name: oncology_staging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
Staging Event¶
Table Name: oncology_stagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Staging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED |
Tnm Staging¶
Table Name: oncology_tnmstaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The classification of the TNM stage | ForeignKey to TNMStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for TNM staging | ForeignKey to TNMStagingMethod |
NULLABLE |
pathological |
boolean |
Whether the staging was based on pathological (true) or clinical (false) evidence. | NULLABLE | |
primaryTumor |
ForeignKey |
T stage (extent of the primary tumor) | ForeignKey to TNMPrimaryTumorCategory |
NULLABLE |
regionalNodes |
ForeignKey |
N stage (degree of spread to regional lymph nodes) | ForeignKey to TNMRegionalNodesCategory |
NULLABLE |
distantMetastases |
ForeignKey |
M stage (presence of distant metastasis) | ForeignKey to TNMDistantMetastasesCategory |
NULLABLE |
grade |
ForeignKey |
G stage (grade of the cancer cells) | ForeignKey to TNMGradeCategory |
NULLABLE |
residualTumor |
ForeignKey |
R stage (extent of residual tumor cells after operation) | ForeignKey to TNMResidualTumorCategory |
NULLABLE |
lymphaticInvasion |
ForeignKey |
L stage (invasion into lymphatic vessels) | ForeignKey to TNMLymphaticInvasionCategory |
NULLABLE |
venousInvasion |
ForeignKey |
V stage (invasion into venous vessels) | ForeignKey to TNMVenousInvasionCategory |
NULLABLE |
perineuralInvasion |
ForeignKey |
Pn stage (invasion into adjunct nerves) | ForeignKey to TNMPerineuralInvasionCategory |
NULLABLE |
serumTumorMarkerLevel |
ForeignKey |
S stage (serum tumor marker level) | ForeignKey to TNMSerumTumorMarkerLevelCategory |
NULLABLE |
Tnm Staging Event¶
Table Name: oncology_tnmstagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TNMStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The classification of the TNM stage | ForeignKey to TNMStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for TNM staging | ForeignKey to TNMStagingMethod |
NULLABLE |
pathological |
boolean |
Whether the staging was based on pathological (true) or clinical (false) evidence. | NULLABLE | |
primaryTumor |
ForeignKey |
T stage (extent of the primary tumor) | ForeignKey to TNMPrimaryTumorCategory |
NULLABLE |
regionalNodes |
ForeignKey |
N stage (degree of spread to regional lymph nodes) | ForeignKey to TNMRegionalNodesCategory |
NULLABLE |
distantMetastases |
ForeignKey |
M stage (presence of distant metastasis) | ForeignKey to TNMDistantMetastasesCategory |
NULLABLE |
grade |
ForeignKey |
G stage (grade of the cancer cells) | ForeignKey to TNMGradeCategory |
NULLABLE |
residualTumor |
ForeignKey |
R stage (extent of residual tumor cells after operation) | ForeignKey to TNMResidualTumorCategory |
NULLABLE |
lymphaticInvasion |
ForeignKey |
L stage (invasion into lymphatic vessels) | ForeignKey to TNMLymphaticInvasionCategory |
NULLABLE |
venousInvasion |
ForeignKey |
V stage (invasion into venous vessels) | ForeignKey to TNMVenousInvasionCategory |
NULLABLE |
perineuralInvasion |
ForeignKey |
Pn stage (invasion into adjunct nerves) | ForeignKey to TNMPerineuralInvasionCategory |
NULLABLE |
serumTumorMarkerLevel |
ForeignKey |
S stage (serum tumor marker level) | ForeignKey to TNMSerumTumorMarkerLevelCategory |
NULLABLE |
Figo Staging¶
Table Name: oncology_figostaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the FIGO stage | ForeignKey to FIGOStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for the FIGO staging | ForeignKey to FIGOStagingMethod |
NULLABLE |
Figo Staging Event¶
Table Name: oncology_figostagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to FIGOStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the FIGO stage | ForeignKey to FIGOStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for the FIGO staging | ForeignKey to FIGOStagingMethod |
NULLABLE |
Binet Staging¶
Table Name: oncology_binetstaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the Binet stage | ForeignKey to BinetStage |
REQUIRED |
Binet Staging Event¶
Table Name: oncology_binetstagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to BinetStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the Binet stage | ForeignKey to BinetStage |
REQUIRED |
Rai Staging¶
Table Name: oncology_raistaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the Rai stage | ForeignKey to RaiStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for the Rai staging | ForeignKey to RaiStagingMethod |
NULLABLE |
Rai Staging Event¶
Table Name: oncology_raistagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to RaiStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the Rai stage | ForeignKey to RaiStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for the Rai staging | ForeignKey to RaiStagingMethod |
NULLABLE |
Breslow Depth¶
Table Name: oncology_breslowdepth
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
depth |
float |
Breslow depth | REQUIRED | |
is_ulcered |
boolean |
Whether the primary tumour presents ulceration | NULLABLE |
Breslow Depth Event¶
Table Name: oncology_breslowdepthevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to BreslowDepth |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
depth |
float |
Breslow depth | REQUIRED | |
is_ulcered |
boolean |
Whether the primary tumour presents ulceration | NULLABLE |
Clark Staging¶
Table Name: oncology_clarkstaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the Clark level stage | ForeignKey to ClarkLevel |
REQUIRED |
Clark Staging Event¶
Table Name: oncology_clarkstagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to ClarkStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the Clark level stage | ForeignKey to ClarkLevel |
REQUIRED |
Iss Staging¶
Table Name: oncology_issstaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of theISS stage | ForeignKey to MyelomaISSStage |
REQUIRED |
Iss Staging Event¶
Table Name: oncology_issstagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to ISSStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of theISS stage | ForeignKey to MyelomaISSStage |
REQUIRED |
Riss Staging¶
Table Name: oncology_rissstaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the RISS stage | ForeignKey to MyelomaRISSStage |
REQUIRED |
Riss Staging Event¶
Table Name: oncology_rissstagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to RISSStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the RISS stage | ForeignKey to MyelomaRISSStage |
REQUIRED |
Inss Stage¶
Table Name: oncology_inssstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the INSS stage | ForeignKey to NeuroblastomaINSSStage |
REQUIRED |
Inss Stage Event¶
Table Name: oncology_inssstageevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to INSSStage |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the INSS stage | ForeignKey to NeuroblastomaINSSStage |
REQUIRED |
Inrgss Stage¶
Table Name: oncology_inrgssstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the INRGSS stage | ForeignKey to NeuroblastomaINRGSSStage |
REQUIRED |
Inrgss Stage Event¶
Table Name: oncology_inrgssstageevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to INRGSSStage |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the INRGSS stage | ForeignKey to NeuroblastomaINRGSSStage |
REQUIRED |
Gleason Grade¶
Table Name: oncology_gleasongrade
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the Gleason grade stage | ForeignKey to GleasonGradeGroupStage |
REQUIRED |
Gleason Grade Event¶
Table Name: oncology_gleasongradeevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to GleasonGrade |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the Gleason grade stage | ForeignKey to GleasonGradeGroupStage |
REQUIRED |
Wilms Stage¶
Table Name: oncology_wilmsstage
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the Wilms stage | ForeignKey to WilmsTumorStage |
REQUIRED |
Wilms Stage Event¶
Table Name: oncology_wilmsstageevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to WilmsStage |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the Wilms stage | ForeignKey to WilmsTumorStage |
REQUIRED |
Rhabdomyosarcoma Clinical Group¶
Table Name: oncology_rhabdomyosarcomaclinicalgroup
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the rhabdomyosarcoma clinical group | ForeignKey to RhabdomyosarcomaClinicalGroup |
REQUIRED |
Rhabdomyosarcoma Clinical Group Event¶
Table Name: oncology_rhabdomyosarcomaclinicalgroupevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to RhabdomyosarcomaClinicalGroup |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the rhabdomyosarcoma clinical group | ForeignKey to RhabdomyosarcomaClinicalGroup |
REQUIRED |
Lymphoma Staging¶
Table Name: oncology_lymphomastaging
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's cancer is staged | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the staging was performed and recorded. | REQUIRED | |
staged_entities |
manytomany |
References to the neoplastic entities that were the focus of the staging. | ManyToMany with NeoplasticEntity |
REQUIRED |
staging |
onetoone |
Staging | ForeignKey to Staging |
PRIMARY KEY, UNIQUE, REQUIRED |
stage |
ForeignKey |
The value of the Lymphoma stage | ForeignKey to LymphomaStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for the Lymphoma staging | ForeignKey to LymphomaStagingMethod |
NULLABLE |
bulky |
boolean |
Bulky modifier indicating if the lymphoma has the presence of bulky disease. | NULLABLE | |
pathological |
boolean |
Whether the staging was based on clinical or pathologic evidence. | NULLABLE | |
modifiers |
manytomany |
Qualifier acting as modifier for the lymphoma stage | ManyToMany with LymphomaStageValueModifier |
REQUIRED |
Lymphoma Staging Event¶
Table Name: oncology_lymphomastagingevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to LymphomaStaging |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
staging |
ForeignKey |
Staging | ForeignKey to Staging |
REQUIRED |
stage |
ForeignKey |
The value of the Lymphoma stage | ForeignKey to LymphomaStage |
REQUIRED |
methodology |
ForeignKey |
Methodology used for the Lymphoma staging | ForeignKey to LymphomaStagingMethod |
NULLABLE |
bulky |
boolean |
Bulky modifier indicating if the lymphoma has the presence of bulky disease. | NULLABLE | |
pathological |
boolean |
Whether the staging was based on clinical or pathologic evidence. | NULLABLE |
Tumor Marker¶
Table Name: oncology_tumormarker
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient related to the tumor marker result | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the tumor marker was analyzed. | REQUIRED | |
analyte |
ForeignKey |
The chemical or biological substance/agent that is analyzed. | ForeignKey to TumorMarkerAnalyte |
REQUIRED |
mass_concentration |
float |
Mass concentration of the analyte (if revelant/measured) | NULLABLE | |
arbitrary_concentration |
float |
Arbitrary concentration of the analyte (if revelant/measured) | NULLABLE | |
substance_concentration |
float |
Substance concentration of the analyte (if revelant/measured) | NULLABLE | |
fraction |
float |
Analyte fraction (if revelant/measured) | NULLABLE | |
multiple_of_median |
float |
Multiples of the median analyte (if revelant/measured) | NULLABLE | |
tumor_proportion_score |
char |
Categorization of the percentage of cells in a tumor that express PD-L1 | NULLABLE | |
immune_cell_score |
char |
Categorization of the percentage of PD-L1 positive immune cells | NULLABLE | |
combined_positive_score |
float |
The number of PD-L1 positive cells, including tumor cells, lymphocytes, and macrophages divided by the total number of viable tumor cells multiplied by 100 | NULLABLE | |
immunohistochemical_score |
char |
Categorization of the number of analyte-positive cells in a sample | NULLABLE | |
presence |
char |
Whether an analyte has tested positive or negative. | NULLABLE | |
nuclear_expression_status |
char |
Categorization of the status of expression of the analyte | NULLABLE | |
related_entities |
manytomany |
References to the neoplastic entities that are related or the focus of the tumor marker analysis. | ManyToMany with NeoplasticEntity |
REQUIRED |
Tumor Marker Event¶
Table Name: oncology_tumormarkerevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TumorMarker |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient related to the tumor marker result | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the tumor marker was analyzed. | REQUIRED | |
analyte |
ForeignKey |
The chemical or biological substance/agent that is analyzed. | ForeignKey to TumorMarkerAnalyte |
REQUIRED |
mass_concentration |
float |
Mass concentration of the analyte (if revelant/measured) | NULLABLE | |
arbitrary_concentration |
float |
Arbitrary concentration of the analyte (if revelant/measured) | NULLABLE | |
substance_concentration |
float |
Substance concentration of the analyte (if revelant/measured) | NULLABLE | |
fraction |
float |
Analyte fraction (if revelant/measured) | NULLABLE | |
multiple_of_median |
float |
Multiples of the median analyte (if revelant/measured) | NULLABLE | |
tumor_proportion_score |
char |
Categorization of the percentage of cells in a tumor that express PD-L1 | NULLABLE | |
immune_cell_score |
char |
Categorization of the percentage of PD-L1 positive immune cells | NULLABLE | |
combined_positive_score |
float |
The number of PD-L1 positive cells, including tumor cells, lymphocytes, and macrophages divided by the total number of viable tumor cells multiplied by 100 | NULLABLE | |
immunohistochemical_score |
char |
Categorization of the number of analyte-positive cells in a sample | NULLABLE | |
presence |
char |
Whether an analyte has tested positive or negative. | NULLABLE | |
nuclear_expression_status |
char |
Categorization of the status of expression of the analyte | NULLABLE |
Tumor Board¶
Table Name: oncology_tumorboard
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient which was discussed at the tumor board | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Date at which the tumor board took place and/or when the board provided a recommendation. | REQUIRED | |
related_entities |
manytomany |
References to the neoplastic entities that were the focus of the tumor board. | ManyToMany with NeoplasticEntity |
REQUIRED |
recommendations |
manytomany |
Recommendation(s) provided by the board regarding the patient's care | ManyToMany with TumorBoardRecommendation |
Tumor Board Event¶
Table Name: oncology_tumorboardevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to TumorBoard |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient which was discussed at the tumor board | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Date at which the tumor board took place and/or when the board provided a recommendation. | REQUIRED |
Unspecified Tumor Board¶
Table Name: oncology_unspecifiedtumorboard
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient which was discussed at the tumor board | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Date at which the tumor board took place and/or when the board provided a recommendation. | REQUIRED | |
related_entities |
manytomany |
References to the neoplastic entities that were the focus of the tumor board. | ManyToMany with NeoplasticEntity |
REQUIRED |
recommendations |
manytomany |
Recommendation(s) provided by the board regarding the patient's care | ManyToMany with TumorBoardRecommendation |
|
tumor_board |
onetoone |
Tumor board | ForeignKey to TumorBoard |
PRIMARY KEY, UNIQUE, REQUIRED |
Unspecified Tumor Board Event¶
Table Name: oncology_unspecifiedtumorboardevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to UnspecifiedTumorBoard |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
tumor_board |
ForeignKey |
Tumor board | ForeignKey to TumorBoard |
REQUIRED |
Molecular Tumor Board¶
Table Name: oncology_moleculartumorboard
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient which was discussed at the tumor board | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Date at which the tumor board took place and/or when the board provided a recommendation. | REQUIRED | |
related_entities |
manytomany |
References to the neoplastic entities that were the focus of the tumor board. | ManyToMany with NeoplasticEntity |
REQUIRED |
recommendations |
manytomany |
Recommendation(s) provided by the board regarding the patient's care | ManyToMany with TumorBoardRecommendation |
|
tumor_board |
onetoone |
Tumor board | ForeignKey to TumorBoard |
PRIMARY KEY, UNIQUE, REQUIRED |
conducted_molecular_comparison |
boolean |
Indicates whether a molecular comparison was conducted during the molecular tumor board | NULLABLE | |
molecular_comparison_match |
ForeignKey |
The neoplastic entity that was matched during the molecular comparison | ForeignKey to NeoplasticEntity |
NULLABLE |
conducted_cup_characterization |
boolean |
Whether there was a cancer of unknown primary (CUP) characterization during the molecular tumor board. | NULLABLE | |
characterized_cup |
boolean |
Whether the cancer of unknown primary (CUP) characterization was successful. | NULLABLE | |
reviewed_reports |
array |
List of genomic reports reviewed during the board meeting. |
Molecular Tumor Board Event¶
Table Name: oncology_moleculartumorboardevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to MolecularTumorBoard |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
tumor_board |
ForeignKey |
Tumor board | ForeignKey to TumorBoard |
REQUIRED |
conducted_molecular_comparison |
boolean |
Indicates whether a molecular comparison was conducted during the molecular tumor board | NULLABLE | |
molecular_comparison_match |
ForeignKey |
The neoplastic entity that was matched during the molecular comparison | ForeignKey to NeoplasticEntity |
NULLABLE |
conducted_cup_characterization |
boolean |
Whether there was a cancer of unknown primary (CUP) characterization during the molecular tumor board. | NULLABLE | |
characterized_cup |
boolean |
Whether the cancer of unknown primary (CUP) characterization was successful. | NULLABLE | |
reviewed_reports |
array |
List of genomic reports reviewed during the board meeting. |
Molecular Therapeutic Recommendation¶
Table Name: oncology_moleculartherapeuticrecommendation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
molecular_tumor_board |
ForeignKey |
Molecular tumor board where the recommendation was issued | ForeignKey to MolecularTumorBoard |
REQUIRED |
expected_effect |
ForeignKey |
Classification of the expected effect of the drug | ForeignKey to ExpectedDrugAction |
NULLABLE |
clinical_trial |
char |
Clinical trial (NCT-Iddentifier) recommended by the board for enrollment | NULLABLE | |
off_label_use |
boolean |
Whether the medication(s) recommended were off-label | NULLABLE | |
within_soc |
boolean |
Whether the medication(s) recommended were within standard of care | NULLABLE | |
drugs |
manytomany |
Drugs(s) being recommended | ManyToMany with AntineoplasticAgent |
|
supporting_genomic_variants |
manytomany |
Genomic variants that support the recommendation | ManyToMany with GenomicVariant |
|
supporting_genomic_signatures |
manytomany |
Genomic signatures that support the recommendation | ManyToMany with GenomicSignature |
|
supporting_tumor_markers |
manytomany |
Tumor markers that support the recommendation | ManyToMany with TumorMarker |
Molecular Therapeutic Recommendation Event¶
Table Name: oncology_moleculartherapeuticrecommendationevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to MolecularTherapeuticRecommendation |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
molecular_tumor_board |
ForeignKey |
Molecular tumor board where the recommendation was issued | ForeignKey to MolecularTumorBoard |
REQUIRED |
expected_effect |
ForeignKey |
Classification of the expected effect of the drug | ForeignKey to ExpectedDrugAction |
NULLABLE |
clinical_trial |
char |
Clinical trial (NCT-Iddentifier) recommended by the board for enrollment | NULLABLE | |
off_label_use |
boolean |
Whether the medication(s) recommended were off-label | NULLABLE | |
within_soc |
boolean |
Whether the medication(s) recommended were within standard of care | NULLABLE |
Vitals¶
Table Name: oncology_vitals
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's vitals are assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the vitals were recorded. | REQUIRED | |
height |
float |
Height of the patient | NULLABLE | |
weight |
float |
Weight of the patient | NULLABLE | |
blood_pressure_systolic |
float |
Systolic blood pressure of the patient | NULLABLE | |
blood_pressure_diastolic |
float |
Diastolic blood pressure of the patient | NULLABLE | |
temperature |
float |
Temperature of the patient | NULLABLE |
Vitals Event¶
Table Name: oncology_vitalsevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Vitals |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
case |
ForeignKey |
Indicates the case of the patient who's vitals are assesed | ForeignKey to PatientCase |
REQUIRED |
date |
date |
Clinically-relevant date at which the vitals were recorded. | REQUIRED | |
height |
float |
Height of the patient | NULLABLE | |
weight |
float |
Weight of the patient | NULLABLE | |
blood_pressure_systolic |
float |
Systolic blood pressure of the patient | NULLABLE | |
blood_pressure_diastolic |
float |
Diastolic blood pressure of the patient | NULLABLE | |
temperature |
float |
Temperature of the patient | NULLABLE |
Research Tables¶
Project¶
Table Name: research_project
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
leader |
ForeignKey |
User responsible for the project and its members | ForeignKey to User |
REQUIRED |
clinical_centers |
array |
Clinical centers that are part of the project | REQUIRED | |
title |
char |
Title of the project | UNIQUE, REQUIRED | |
summary |
text |
Description of the project | REQUIRED | |
ethics_approval_number |
char |
Ethics approval number of the project | REQUIRED | |
status |
char |
Status of the project | REQUIRED | |
data_constraints |
json |
Data constraints of the project | REQUIRED | |
members |
manytomany |
Users that are part of the project | ManyToMany with User |
REQUIRED |
Project Event¶
Table Name: research_projectevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Project |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
leader |
ForeignKey |
User responsible for the project and its members | ForeignKey to User |
REQUIRED |
clinical_centers |
array |
Clinical centers that are part of the project | REQUIRED | |
title |
char |
Title of the project | REQUIRED | |
summary |
text |
Description of the project | REQUIRED | |
ethics_approval_number |
char |
Ethics approval number of the project | REQUIRED | |
status |
char |
Status of the project | REQUIRED | |
data_constraints |
json |
Data constraints of the project | REQUIRED |
Project Membership¶
Table Name: research_projectmembership
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
member |
ForeignKey |
User that is part of a project | ForeignKey to User |
REQUIRED |
project |
ForeignKey |
Project that the user is part of | ForeignKey to Project |
REQUIRED |
date_joined |
date |
Date when the user joined the project |
Project Data Manager Grant¶
Table Name: research_projectdatamanagergrant
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
member |
ForeignKey |
Manager of the project data | ForeignKey to User |
REQUIRED |
project |
ForeignKey |
Project under which the permission is granted | ForeignKey to Project |
REQUIRED |
revoked |
boolean |
A flag that indicated whether the authorization has been revoked | REQUIRED | |
validity_period |
daterange |
Period of validity | REQUIRED |
Project Data Manager Grant Event¶
Table Name: research_projectdatamanagergrantevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to ProjectDataManagerGrant |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
member |
ForeignKey |
Manager of the project data | ForeignKey to User |
REQUIRED |
project |
ForeignKey |
Project under which the permission is granted | ForeignKey to Project |
REQUIRED |
revoked |
boolean |
A flag that indicated whether the authorization has been revoked | REQUIRED | |
validity_period |
daterange |
Period of validity | REQUIRED |
Dataset¶
Table Name: research_dataset
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
name |
char |
Name of the dataset | REQUIRED | |
summary |
text |
Summary of the dataset | NULLABLE | |
rules |
json |
Dataset composition rules | REQUIRED | |
project |
ForeignKey |
Project that the dataset is part of | ForeignKey to Project |
REQUIRED |
Dataset Event¶
Table Name: research_datasetevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Dataset |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
name |
char |
Name of the dataset | REQUIRED | |
summary |
text |
Summary of the dataset | NULLABLE | |
rules |
json |
Dataset composition rules | REQUIRED | |
project |
ForeignKey |
Project that the dataset is part of | ForeignKey to Project |
REQUIRED |
Cohort¶
Table Name: research_cohort
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
uuid |
Unique identifier of the resource (UUID v4). | PRIMARY KEY, UNIQUE, REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
name |
char |
Name of the cohort | REQUIRED | |
include_criteria |
json |
JSON object defining inclusion criteria | NULLABLE | |
exclude_criteria |
json |
JSON object defining exclusion criteria | NULLABLE | |
project |
ForeignKey |
Project to which the cohort is associated | ForeignKey to Project |
NULLABLE |
cases |
manytomany |
Cases composing the cohort | ManyToMany with PatientCase |
REQUIRED |
manual_choices |
manytomany |
Manually added cases | ManyToMany with PatientCase |
REQUIRED |
frozen_set |
manytomany |
Frozen cases | ManyToMany with PatientCase |
REQUIRED |
Cohort Event¶
Table Name: research_cohortevent
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
pgh_id |
auto |
Pgh id | PRIMARY KEY, UNIQUE | |
pgh_created_at |
datetime |
Pgh created at | ||
pgh_label |
text |
The event label. | REQUIRED | |
pgh_obj |
ForeignKey |
Pgh obj | ForeignKey to Cohort |
REQUIRED |
pgh_context |
ForeignKey |
Pgh context | ForeignKey to Context |
NULLABLE, REQUIRED |
id |
uuid |
Unique identifier of the resource (UUID v4). | REQUIRED | |
external_source |
char |
The digital source of the data, relevant for automated data | NULLABLE | |
external_source_id |
char |
The data identifier at the digital source of the data, relevant for automated data | NULLABLE | |
name |
char |
Name of the cohort | REQUIRED | |
include_criteria |
json |
JSON object defining inclusion criteria | NULLABLE | |
exclude_criteria |
json |
JSON object defining exclusion criteria | NULLABLE | |
project |
ForeignKey |
Project to which the cohort is associated | ForeignKey to Project |
NULLABLE |
Account Tables¶
Email Address¶
Table Name: account_emailaddress
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
user |
ForeignKey |
User | ForeignKey to User |
REQUIRED |
email |
char |
Email address | REQUIRED | |
verified |
boolean |
Verified | REQUIRED | |
primary |
boolean |
Primary | REQUIRED |
Email Confirmation¶
Table Name: account_emailconfirmation
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
email_address |
ForeignKey |
Email address | ForeignKey to EmailAddress |
REQUIRED |
created |
datetime |
Created | REQUIRED | |
sent |
datetime |
Sent | NULLABLE, REQUIRED | |
key |
char |
Key | UNIQUE, REQUIRED |
Socialaccount Tables¶
Social Application¶
Table Name: socialaccount_socialapp
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
provider |
char |
Provider | REQUIRED | |
provider_id |
char |
Provider id | ||
name |
char |
Name | REQUIRED | |
client_id |
char |
App ID, or consumer key | REQUIRED | |
secret |
char |
API secret, client secret, or consumer secret | ||
key |
char |
Key | ||
settings |
json |
Settings |
Social Account¶
Table Name: socialaccount_socialaccount
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
user |
ForeignKey |
User | ForeignKey to User |
REQUIRED |
provider |
char |
Provider | REQUIRED | |
uid |
char |
Uid | REQUIRED | |
last_login |
datetime |
Last login | ||
date_joined |
datetime |
Date joined | ||
extra_data |
json |
Extra data | REQUIRED |
Social Application Token¶
Table Name: socialaccount_socialtoken
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
app |
ForeignKey |
App | ForeignKey to SocialApp |
NULLABLE |
account |
ForeignKey |
Account | ForeignKey to SocialAccount |
REQUIRED |
token |
text |
"oauth_token" (OAuth1) or access token (OAuth2) | REQUIRED | |
token_secret |
text |
"oauth_token_secret" (OAuth1) or refresh token (OAuth2) | ||
expires_at |
datetime |
Expires at | NULLABLE |
Usersessions Tables¶
User Session¶
Table Name: usersessions_usersession
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
bigauto |
Id | PRIMARY KEY, UNIQUE | |
user |
ForeignKey |
User | ForeignKey to User |
REQUIRED |
created_at |
datetime |
Created at | REQUIRED | |
ip |
genericipaddress |
Ip | REQUIRED | |
last_seen_at |
datetime |
Last seen at | REQUIRED | |
session_key |
char |
Session key | UNIQUE, REQUIRED | |
user_agent |
char |
User agent | REQUIRED | |
data |
json |
Data | REQUIRED |
Auth Tables¶
Permission¶
Table Name: auth_permission
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
name |
char |
Name | REQUIRED | |
content_type |
ForeignKey |
Content type | ForeignKey to ContentType |
REQUIRED |
codename |
char |
Codename | REQUIRED |
Group¶
Table Name: auth_group
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
name |
char |
Name | UNIQUE, REQUIRED | |
permissions |
manytomany |
Permissions | ManyToMany with Permission |
User¶
Table Name: auth_user
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
password |
char |
Password | REQUIRED | |
last_login |
datetime |
Last login | NULLABLE | |
is_superuser |
boolean |
Designates that this user has all permissions without explicitly assigning them. | REQUIRED | |
username |
char |
Required. 150 characters or fewer. Letters, digits and @/./+/-/_ only. | UNIQUE, REQUIRED | |
first_name |
char |
First name | ||
last_name |
char |
Last name | ||
email |
char |
Email address | ||
is_staff |
boolean |
Designates whether the user can log into this admin site. | REQUIRED | |
is_active |
boolean |
Designates whether this user should be treated as active. Unselect this instead of deleting accounts. | REQUIRED | |
date_joined |
datetime |
Date joined | REQUIRED | |
groups |
manytomany |
The groups this user belongs to. A user will get all permissions granted to each of their groups. | ManyToMany with Group |
|
user_permissions |
manytomany |
Specific permissions for this user. | ManyToMany with Permission |
Contenttypes Tables¶
Content Type¶
Table Name: django_content_type
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
id |
auto |
Id | PRIMARY KEY, UNIQUE | |
app_label |
char |
App label | REQUIRED | |
model |
char |
Python model class name | REQUIRED |
Sessions Tables¶
Session¶
Table Name: django_session
Field Name | Type | Description | Relation | Constraints |
---|---|---|---|---|
session_key |
char |
Session key | PRIMARY KEY, UNIQUE, REQUIRED | |
session_data |
text |
Session data | REQUIRED | |
expire_date |
datetime |
Expire date | REQUIRED |